Mercurial > repos > iuc > medaka_consensus

comparison consensus.xml @ 14:b2aae698b9d3 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 52289bc7b99bfa8a3bda46cb35cea98399419dab"
author iuc
date Thu, 18 Nov 2021 20:01:50 +0000
parents 0413e62b757a
children 682d1e2c8be4
comparison
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13:fa11aa8103b2 14:b2aae698b9d3
92 <!-- #1 default --> 92 <!-- #1 default -->
93 <test expect_num_outputs="1"> 93 <test expect_num_outputs="1">
94 <param name="bam" value="alignment.bam"/> 94 <param name="bam" value="alignment.bam"/>
95 <output name="out_result"> 95 <output name="out_result">
96 <assert_contents> 96 <assert_contents>
97 <has_size value="32624"/> 97 <has_size value="26224"/>
98 </assert_contents> 98 </assert_contents>
99 </output> 99 </output>
100 </test> 100 </test>
101 <!-- #2 --> 101 <!-- #2 -->
102 <test expect_num_outputs="2"> 102 <test expect_num_outputs="2">
109 <param name="save_features" value="true"/> 109 <param name="save_features" value="true"/>
110 <param name="tag_keep_missing" value="true"/> 110 <param name="tag_keep_missing" value="true"/>
111 <param name="out" value="result,log"/> 111 <param name="out" value="result,log"/>
112 <output name="out_result"> 112 <output name="out_result">
113 <assert_contents> 113 <assert_contents>
114 <has_size value="38400"/> 114 <has_size value="32000"/>
115 </assert_contents> 115 </assert_contents>
116 </output> 116 </output>
117 <output name="out_log"> 117 <output name="out_log">
118 <assert_contents> 118 <assert_contents>
119 <has_text_matching expression=".+Validating and finalising output data."/> 119 <has_text_matching expression=".+Validating and finalising output data."/>
128 128
129 @WID@ 129 @WID@
130 130
131 The module *consensus* runs inference from a trained model and alignments. 131 The module *consensus* runs inference from a trained model and alignments.
132 132
133 **Input** 133 ----
134 134
135 Alignment (BAM) 135 .. class:: infomark
136 136
137 **Output** 137 **Inputs and outputs**
138 138
139 Results (H5/HDF) 139 Medaka requires a BAM file as input, and generates a Hierarchical Data Format (H5/HDF) datafile.
140
141
142 @MODELS@
143
144 ----
145
146 .. class:: infomark
140 147
141 **References** 148 **References**
142 149
143 @REFERENCES@ 150 @REFERENCES@
144 ]]></help> 151 ]]></help>