Mercurial > repos > iuc > medaka_snp
comparison macros.xml @ 1:630e6aeeb7e8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 7105600c6ba7a49e8933e1a1357566fc2126df58
author | iuc |
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date | Tue, 26 Sep 2023 10:11:25 +0000 |
parents | 179342c7b86c |
children |
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0:179342c7b86c | 1:630e6aeeb7e8 |
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1 <macros> | 1 <macros> |
2 <token name="@TOOL_VERSION@">1.7.2</token> | 2 <token name="@TOOL_VERSION@">1.7.2</token> |
3 <token name="@VERSION_SUFFIX@">0</token> | 3 <token name="@VERSION_SUFFIX@">1</token> |
4 <token name="@PROFILE@">21.01</token> | 4 <token name="@PROFILE@">21.01</token> |
5 <xml name="bio_tools"> | 5 <xml name="bio_tools"> |
6 <xrefs> | 6 <xrefs> |
7 <xref type="bio.tools">medaka</xref> | 7 <xref type="bio.tools">medaka</xref> |
8 </xrefs> | 8 </xrefs> |
35 <token name="@REF_FASTA@"><![CDATA[ | 35 <token name="@REF_FASTA@"><![CDATA[ |
36 #if $reference_source.reference_source_selector == 'history': | 36 #if $reference_source.reference_source_selector == 'history': |
37 #if $reference_source.ref_file.ext.endswith(".gz") | 37 #if $reference_source.ref_file.ext.endswith(".gz") |
38 gunzip -c '$reference_source.ref_file' > reference.fa && | 38 gunzip -c '$reference_source.ref_file' > reference.fa && |
39 #else | 39 #else |
40 ln -f -s '$reference_source.ref_file' reference.fa && | 40 cp '$reference_source.ref_file' reference.fa && |
41 #end if | 41 #end if |
42 #else: | 42 #else: |
43 ln -f -s '$reference_source.ref_file.fields.path' reference.fa && | 43 cp '$reference_source.ref_file.fields.path' reference.fa && |
44 #end if | 44 #end if |
45 ]]></token> | 45 ]]></token> |
46 | 46 |
47 <!-- | 47 <!-- |
48 input | 48 input |