Mercurial > repos > iuc > meme_chip

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    <title>MEME ChIP</title>
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      <h1>MEME-ChIP</h1>
      <h2>Motif Analysis of Large Nucleotide Datasets</h2>
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    <p>
      If you use MEME-ChIP in your research, please cite the following paper:<br />
    </p>
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      <a class="jump" href="#data_sec">Motifs</a>
      &nbsp;&nbsp;|&nbsp;&nbsp;
      <a class="jump" href="#programs_sec">Programs</a>
      &nbsp;&nbsp;|&nbsp;&nbsp;
      <a class="jump" href="#input_sec">Input Files</a>
      &nbsp;&nbsp;|&nbsp;&nbsp;
      <a class="jump" href="#info_sec">Program information</a>
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    <!-- write out the job description -->
    <span id="ins_desc"></span>
    <script>make_description($("ins_desc"), data["description"]);</script>
    <!-- write out clustered motifs -->
    <h2 class="mainh pad2" id="data_sec">Motifs</h2>
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      <p>The significant motifs
      (E-value &le; <span id="ins_filter_thresh"></span>)
      found by the programs MEME, DREME and CentriMo;
      clustered by similarity and ordered by E-value.</p>
      <script>$("ins_filter_thresh").innerHTML = data["filter_thresh"]; </script>
      <div class="motifbox">
        <span class="action" onclick="show_all(true)">Expand All Clusters</span>
        <span class="action" onclick="show_all(false)">Collapse All Clusters</span>
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      <div id="logos"></div>
      <script>make_clustered_motifs($("logos"));</script>
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    <h2 class="mainh pad2" id="programs_sec">Programs</h2>
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    <h2 id="input_sec" class="mainh pad2">Input Files</h2>
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      <div id="sequence_db"></div>
      <script>make_sequence_db_listing('sequence_db', "Primary Sequences");</script>
      <div id="neg_sequence_db"></div>
      <script>make_sequence_db_listing('neg_sequence_db', "Control Sequences");</script>
      <h4 id="motif_dbs_header">Motifs</h4>
      <div id="motif_dbs"></div>
      <script>make_motif_db_listing($("motif_dbs"));</script>
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        <h5 id="version">MEME-ChIP version</h5>
        <span id="ins_version"></span>
        (Release date: <span id="ins_release"></span>)<br>
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      <script>
        $("ins_version").innerHTML = data["version"];
        $("ins_release").innerHTML = data["release"];
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      <div class="subsection">
        <h5 id="reference">Reference</h5>
        <div class="subsection">
          <h5 id="command">Command line summary</h5>
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author	iuc
date	Sat, 27 Nov 2021 09:46:02 +0000
parents	6095db402811
children