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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme_chip commit 1661efcd3fb5d37fd972588bcf328a6ac705d4fa"
author iuc
date Sat, 27 Nov 2021 14:39:19 +0000
parents 6095db402811
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<!doctype html>
<html>
  <head>
    <meta charset="UTF-8">
    <title>MEME ChIP</title>
  </head>
  <body onload="page_loaded()" onpageshow="page_shown(event)" 
    onresize="page_resize()" onscroll="delayed_process_draw_tasks()">
    <div class="prog_logo big">
      <h1>MEME-ChIP</h1>
      <h2>Motif Analysis of Large Nucleotide Datasets</h2>
    </div>
    <p>
      If you use MEME-ChIP in your research, please cite the following paper:<br />
    </p>
    <!-- navigation -->
    <div class="pad2">
      <a class="jump" href="#data_sec">Motifs</a>
      &nbsp;&nbsp;|&nbsp;&nbsp;
      <a class="jump" href="#programs_sec">Programs</a>
      &nbsp;&nbsp;|&nbsp;&nbsp;
      <a class="jump" href="#input_sec">Input Files</a>
      &nbsp;&nbsp;|&nbsp;&nbsp;
      <a class="jump" href="#info_sec">Program information</a>
    </div>
    <!-- alert the user when their browser is not up to the task -->
    <noscript><h1 style="color:red">Javascript is required to view these results!</h1></noscript>
    <h1 id="html5_warning" style="color:red; display:none;">Your browser does not support canvas!</h1>
    <script>if (!window.HTMLCanvasElement) $("html5_warning").style.display = "block";</script>
    <!-- write out the job description -->
    <span id="ins_desc"></span>
    <script>make_description($("ins_desc"), data["description"]);</script>
    <!-- write out clustered motifs -->
    <h2 class="mainh pad2" id="data_sec">Motifs</h2>
    <div class="box">
      <p>The significant motifs 
      (E-value &le; <span id="ins_filter_thresh"></span>)
      found by the programs MEME, DREME and CentriMo; 
      clustered by similarity and ordered by E-value.</p>
      <script>$("ins_filter_thresh").innerHTML = data["filter_thresh"]; </script>
      <div class="motifbox">
        <span class="action" onclick="show_all(true)">Expand All Clusters</span>
        <span class="action" onclick="show_all(false)">Collapse All Clusters</span>
      </div>
      <div id="logos"></div>
      <script>make_clustered_motifs($("logos"));</script>
    </div>
    <!-- write out a list of all programs run -->
    <h2 class="mainh pad2" id="programs_sec">Programs</h2>
    <div class="box" id="program_listing"></div>
    <script>make_program_listing($("program_listing"));</script>
    <!-- write out input files -->
    <h2 id="input_sec" class="mainh pad2">Input Files</h2>
    <div id="input_files" class="box">
      <div id="sequence_db"></div>
      <script>make_sequence_db_listing('sequence_db', "Primary Sequences");</script>
      <div id="neg_sequence_db"></div>
      <script>make_sequence_db_listing('neg_sequence_db', "Control Sequences");</script>
      <h4 id="motif_dbs_header">Motifs</h4>
      <div id="motif_dbs"></div>
      <script>make_motif_db_listing($("motif_dbs"));</script>
    </div>
    <!-- list information on this program -->
    <div id="info_sec" class="bar">
      <div class="subsection">
        <h5 id="version">MEME-ChIP version</h5>
        <span id="ins_version"></span> 
        (Release date: <span id="ins_release"></span>)<br>
      </div>
      <script>
        $("ins_version").innerHTML = data["version"];
        $("ins_release").innerHTML = data["release"];
      </script>
      <div class="subsection">
        <h5 id="reference">Reference</h5>
        <div class="subsection">
          <h5 id="command">Command line summary</h5>
          <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly">
          </textarea>
          <script>$("cmd").value = data["cmd"].join(" ");</script>
        </div>
      </div>
    </div>
    <div id="scrollpad"></div>
  </body>
</html>