Mercurial > repos > iuc > meme_dreme

annotate test-data/meme_output_txt_2.txt @ 0:b386032d758d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author iuc
date Wed, 25 Apr 2018 12:13:22 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
1 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
2 MEME - Motif discovery tool
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
3 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
4 MEME version 4.11.2 (Release date: Thu May 05 14:58:55 2016 -0700)
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
5
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
6 For further information on how to interpret these results or to get
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
7 a copy of the MEME software please access http://meme-suite.org .
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
8
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
9 This file may be used as input to the MAST algorithm for searching
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
10 sequence databases for matches to groups of motifs. MAST is available
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
11 for interactive use and downloading at http://meme-suite.org .
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
12 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
13
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
14
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
15 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
16 REFERENCE
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
17 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
18 If you use this program in your research, please cite:
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
19
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
20 Timothy L. Bailey and Charles Elkan,
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
21 "Fitting a mixture model by expectation maximization to discover
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
22 motifs in biopolymers", Proceedings of the Second International
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
23 Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
24 AAAI Press, Menlo Park, California, 1994.
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
25 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
26
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
27
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
28 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
29 TRAINING SET
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
30 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
31 DATAFILE= Galaxy_FASTA_Input
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
32 ALPHABET= ACGT
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
33 Sequence name Weight Length Sequence name Weight Length
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
34 ------------- ------ ------ ------------- ------ ------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
35 chr21_19617074_19617124_ 1.0000 50 chr21_26934381_26934431_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
36 chr21_28217753_28217803_ 1.0000 50 chr21_31710037_31710087_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
37 chr21_31744582_31744632_ 1.0000 50 chr21_31768316_31768366_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
38 chr21_31914206_31914256_ 1.0000 50 chr21_31933633_31933683_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
39 chr21_31962741_31962791_ 1.0000 50 chr21_31964683_31964733_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
40 chr21_31973364_31973414_ 1.0000 50 chr21_31992870_31992920_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
41 chr21_32185595_32185645_ 1.0000 50 chr21_32202076_32202126_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
42 chr21_32253899_32253949_ 1.0000 50 chr21_32410820_32410870_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
43 chr21_36411748_36411798_ 1.0000 50 chr21_37838750_37838800_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
44 chr21_45705687_45705737_ 1.0000 50 chr21_45971413_45971463_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
45 chr21_45978668_45978718_ 1.0000 50 chr21_45993530_45993580_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
46 chr21_46020421_46020471_ 1.0000 50 chr21_46031920_46031970_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
47 chr21_46046964_46047014_ 1.0000 50 chr21_46057197_46057247_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
48 chr21_46086869_46086919_ 1.0000 50 chr21_46102103_46102153_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
49 chr21_47517957_47518007_ 1.0000 50 chr21_47575506_47575556_ 1.0000 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
50 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
51
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
52 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
53 COMMAND LINE SUMMARY
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
54 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
55 This information can also be useful in the event you wish to report a
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
56 problem with the MEME software.
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
57
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
58 command: meme /tmp/tmpCNK6l0/files/000/dataset_26.dat -o /tmp/tmpCNK6l0/job_working_directory/000/14/dataset_28_files -nostatus -maxsize 1000000 -sf Galaxy_FASTA_Input -dna -mod zoops -nmotifs 1 -wnsites 0.8 -evt inf -minw 8 -maxw 50 -wg 11 -ws 1 -maxiter 50 -distance 0.001 -prior dirichlet -b 0.01 -plib /tmp/tmpCNK6l0/files/000/dataset_27.dat -spmap uni -spfuzz 0.5
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
59
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
60 model: mod= zoops nmotifs= 1 evt= inf
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
61 object function= E-value of product of p-values
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
62 width: minw= 8 maxw= 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
63 width: wg= 11 ws= 1 endgaps= yes
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
64 nsites: minsites= 2 maxsites= 30 wnsites= 0.8
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
65 theta: spmap= uni spfuzz= 0.5
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
66 global: substring= yes branching= no wbranch= no
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
67 em: prior= dirichlet b= 0.01 maxiter= 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
68 distance= 0.001
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
69 data: n= 1500 N= 30 shuffle= -1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
70 strands: +
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
71 sample: seed= 0 ctfrac= -1 maxwords= -1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
72 Dirichlet mixture priors file: dataset_27.dat
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
73 Letter frequencies in dataset:
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
74 A 0.294 C 0.231 G 0.257 T 0.217
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
75 Background letter frequencies (from dataset with add-one prior applied):
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
76 A 0.294 C 0.231 G 0.257 T 0.217
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
77 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
78
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
79
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
80 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
81 MOTIF 1 MEME width = 11 sites = 30 llr = 254 E-value = 5.1e-040
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
82 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
83 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
84 Motif 1 Description
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
85 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
86 Simplified A 3313:9:a798
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
87 pos.-specific C 1:3::1:::1:
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
88 probability G 6756::::::2
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
89 matrix T 1:11a1a:3::
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
90
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
91 bits 2.2 *
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
92 2.0 * *
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
93 1.8 * *
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
94 1.5 * ** *
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
95 Relative 1.3 * ** *
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
96 Entropy 1.1 ******
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
97 (12.2 bits) 0.9 * *******
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
98 0.7 * *******
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
99 0.4 ** ********
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
100 0.2 ***********
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
101 0.0 -----------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
102
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
103 Multilevel GGGGTATAAAA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
104 consensus AACA T
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
105 sequence
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
106
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
107 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
108
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
109 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
110 Motif 1 sites sorted by position p-value
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
111 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
112 Sequence name Start P-value Site
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
113 ------------- ----- --------- -----------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
114 chr21_46046964_46047014_ 13 4.51e-07 AAGGCCAGGA GGGGTATAAAA GCCTGAGAGC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
115 chr21_46031920_46031970_ 16 2.22e-06 ATACCCAGGG AGGGTATAAAA CCTCAGCAGC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
116 chr21_32202076_32202126_ 14 2.74e-06 CCACCAGCTT GAGGTATAAAA AGCCCTGTAC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
117 chr21_46057197_46057247_ 37 4.86e-06 ACAGGCCCTG GGCATATAAAA GCC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
118 chr21_45993530_45993580_ 8 4.86e-06 CCAAGGA GGAGTATAAAA GCCCCACAAA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
119 chr21_45971413_45971463_ 10 4.86e-06 CAGGCCCTG GGCATATAAAA GCCCCAGCAG
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
120 chr21_31964683_31964733_ 14 4.86e-06 GATTCACTGA GGCATATAAAA GGCCCTCTGC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
121 chr21_47517957_47518007_ 33 6.48e-06 CCGGCGGGGC GGGGTATAAAG GGGGCGG
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
122 chr21_45978668_45978718_ 5 6.48e-06 CAGA GGGGTATAAAG GTTCCGACCA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
123 chr21_32185595_32185645_ 19 6.48e-06 CACCAGAGCT GGGATATATAA AGAAGGTTCT
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
124 chr21_32410820_32410870_ 22 1.38e-05 AATCACTGAG GATGTATAAAA GTCCCAGGGA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
125 chr21_31992870_31992920_ 17 1.38e-05 CACTATTGAA GATGTATAAAA TTTCATTTGC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
126 chr21_19617074_19617124_ 40 1.41e-05 CCTCGGGACG TGGGTATATAA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
127 chr21_31914206_31914256_ 16 1.61e-05 CCCACTACTT AGAGTATAAAA TCATTCTGAG
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
128 chr21_46020421_46020471_ 3 1.95e-05 GA GACATATAAAA GCCAACATCC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
129 chr21_32253899_32253949_ 18 1.95e-05 CCCACCAGCA AGGATATATAA AAGCTCAGGA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
130 chr21_45705687_45705737_ 38 2.16e-05 CGTGGTCGCG GGGGTATAACA GC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
131 chr21_47575506_47575556_ 31 3.04e-05 GCTGCCGGTG AGCGTATAAAG GCCCTGGCG
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
132 chr21_31744582_31744632_ 13 3.04e-05 CAGGTCTAAG AGCATATATAA CTTGGAGTCC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
133 chr21_31768316_31768366_ 1 3.67e-05 . AACGTATATAA ATGGTCCTGT
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
134 chr21_26934381_26934431_ 28 3.93e-05 AGTCACAAGT GAGTTATAAAA GGGTCGCACG
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
135 chr21_31933633_31933683_ 5 5.65e-05 TCAG AGTATATATAA ATGTTCCTGT
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
136 chr21_31710037_31710087_ 15 6.24e-05 CCCAGGTTTC TGAGTATATAA TCGCCGCACC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
137 chr21_36411748_36411798_ 23 7.15e-05 AGTTTCAGTT GGCATCtaaaa attatataac
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
138 chr21_46102103_46102153_ 37 1.39e-04 TGCCTGGGTC CAGGTATAAAG GCT
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
139 chr21_46086869_46086919_ 38 1.39e-04 TGCCTGGGCC CAGGTATAAAG GC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
140 chr21_37838750_37838800_ 3 4.81e-04 ga tggttttataa ggggcctcac
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
141 chr21_31962741_31962791_ 14 8.57e-04 TATAACTCAG GTTGGATAAAA TAATTTGTAC
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
142 chr21_31973364_31973414_ 8 1.47e-03 aaactta aaactctataa acttaaaact
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
143 chr21_28217753_28217803_ 27 2.64e-03 GGTGGGGGTG GGGGTTTCACT GGTCCACTAT
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
144 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
145
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
146 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
147 Motif 1 block diagrams
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
148 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
149 SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
150 ------------- ---------------- -------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
151 chr21_46046964_46047014_ 4.5e-07 12_[+1]_27
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
152 chr21_46031920_46031970_ 2.2e-06 15_[+1]_24
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
153 chr21_32202076_32202126_ 2.7e-06 13_[+1]_26
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
154 chr21_46057197_46057247_ 4.9e-06 36_[+1]_3
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
155 chr21_45993530_45993580_ 4.9e-06 7_[+1]_32
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
156 chr21_45971413_45971463_ 4.9e-06 9_[+1]_30
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
157 chr21_31964683_31964733_ 4.9e-06 13_[+1]_26
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
158 chr21_47517957_47518007_ 6.5e-06 32_[+1]_7
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
159 chr21_45978668_45978718_ 6.5e-06 4_[+1]_35
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
160 chr21_32185595_32185645_ 6.5e-06 18_[+1]_21
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
161 chr21_32410820_32410870_ 1.4e-05 21_[+1]_18
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
162 chr21_31992870_31992920_ 1.4e-05 16_[+1]_23
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
163 chr21_19617074_19617124_ 1.4e-05 39_[+1]
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
164 chr21_31914206_31914256_ 1.6e-05 15_[+1]_24
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
165 chr21_46020421_46020471_ 1.9e-05 2_[+1]_37
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
166 chr21_32253899_32253949_ 1.9e-05 17_[+1]_22
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
167 chr21_45705687_45705737_ 2.2e-05 37_[+1]_2
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
168 chr21_47575506_47575556_ 3e-05 30_[+1]_9
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
169 chr21_31744582_31744632_ 3e-05 12_[+1]_27
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
170 chr21_31768316_31768366_ 3.7e-05 [+1]_39
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
171 chr21_26934381_26934431_ 3.9e-05 27_[+1]_12
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
172 chr21_31933633_31933683_ 5.6e-05 4_[+1]_35
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
173 chr21_31710037_31710087_ 6.2e-05 14_[+1]_25
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
174 chr21_36411748_36411798_ 7.1e-05 22_[+1]_17
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
175 chr21_46102103_46102153_ 0.00014 36_[+1]_3
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
176 chr21_46086869_46086919_ 0.00014 37_[+1]_2
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
177 chr21_37838750_37838800_ 0.00048 2_[+1]_37
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
178 chr21_31962741_31962791_ 0.00086 13_[+1]_26
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
179 chr21_31973364_31973414_ 0.0015 7_[+1]_32
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
180 chr21_28217753_28217803_ 0.0026 26_[+1]_13
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
181 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
182
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
183 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
184 Motif 1 in BLOCKS format
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
185 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
186 BL MOTIF 1 width=11 seqs=30
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
187 chr21_46046964_46047014_ ( 13) GGGGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
188 chr21_46031920_46031970_ ( 16) AGGGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
189 chr21_32202076_32202126_ ( 14) GAGGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
190 chr21_46057197_46057247_ ( 37) GGCATATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
191 chr21_45993530_45993580_ ( 8) GGAGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
192 chr21_45971413_45971463_ ( 10) GGCATATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
193 chr21_31964683_31964733_ ( 14) GGCATATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
194 chr21_47517957_47518007_ ( 33) GGGGTATAAAG 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
195 chr21_45978668_45978718_ ( 5) GGGGTATAAAG 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
196 chr21_32185595_32185645_ ( 19) GGGATATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
197 chr21_32410820_32410870_ ( 22) GATGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
198 chr21_31992870_31992920_ ( 17) GATGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
199 chr21_19617074_19617124_ ( 40) TGGGTATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
200 chr21_31914206_31914256_ ( 16) AGAGTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
201 chr21_46020421_46020471_ ( 3) GACATATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
202 chr21_32253899_32253949_ ( 18) AGGATATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
203 chr21_45705687_45705737_ ( 38) GGGGTATAACA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
204 chr21_47575506_47575556_ ( 31) AGCGTATAAAG 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
205 chr21_31744582_31744632_ ( 13) AGCATATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
206 chr21_31768316_31768366_ ( 1) AACGTATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
207 chr21_26934381_26934431_ ( 28) GAGTTATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
208 chr21_31933633_31933683_ ( 5) AGTATATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
209 chr21_31710037_31710087_ ( 15) TGAGTATATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
210 chr21_36411748_36411798_ ( 23) GGCATCTAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
211 chr21_46102103_46102153_ ( 37) CAGGTATAAAG 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
212 chr21_46086869_46086919_ ( 38) CAGGTATAAAG 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
213 chr21_37838750_37838800_ ( 3) TGGTTTTATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
214 chr21_31962741_31962791_ ( 14) GTTGGATAAAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
215 chr21_31973364_31973414_ ( 8) AAACTCTATAA 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
216 chr21_28217753_28217803_ ( 27) GGGGTTTCACT 1
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
217 //
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
218
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
219 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
220
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
221 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
222 Motif 1 position-specific scoring matrix
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
223 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
224 log-odds matrix: alength= 4 w= 11 n= 1200 bayes= 5.2854 E= 5.1e-040
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
225 -14 -179 114 -112
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
226 3 -1155 137 -270
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
227 -114 20 86 -71
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
228 3 -279 122 -170
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
229 -1155 -1155 -295 215
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
230 156 -179 -1155 -170
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
231 -1155 -1155 -1155 220
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
232 172 -279 -1155 -1155
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
233 125 -1155 -1155 46
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
234 167 -179 -1155 -1155
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
235 144 -1155 -63 -270
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
236 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
237
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
238 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
239 Motif 1 position-specific probability matrix
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
240 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
241 letter-probability matrix: alength= 4 w= 11 nsites= 30 E= 5.1e-040
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
242 0.266667 0.066667 0.566667 0.100000
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
243 0.300000 0.000000 0.666667 0.033333
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
244 0.133333 0.266667 0.466667 0.133333
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
245 0.300000 0.033333 0.600000 0.066667
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
246 0.000000 0.000000 0.033333 0.966667
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
247 0.866667 0.066667 0.000000 0.066667
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
248 0.000000 0.000000 0.000000 1.000000
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
249 0.966667 0.033333 0.000000 0.000000
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
250 0.700000 0.000000 0.000000 0.300000
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
251 0.933333 0.066667 0.000000 0.000000
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
252 0.800000 0.000000 0.166667 0.033333
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
253 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
254
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
255 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
256 Motif 1 regular expression
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
257 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
258 [GA][GA][GC][GA]TATA[AT]AA
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
259 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
260
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
261
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
262
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
263
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
264 Time 0.32 secs.
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
265
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
266 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
267
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
268
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
269 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
270 SUMMARY OF MOTIFS
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
271 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
272
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
273 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
274 Combined block diagrams: non-overlapping sites with p-value < 0.0001
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
275 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
276 SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
277 ------------- ---------------- -------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
278 chr21_19617074_19617124_ 5.63e-04 39_[+1(1.41e-05)]
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
279 chr21_26934381_26934431_ 1.57e-03 27_[+1(3.93e-05)]_12
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
280 chr21_28217753_28217803_ 1.00e-01 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
281 chr21_31710037_31710087_ 2.49e-03 14_[+1(6.24e-05)]_25
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
282 chr21_31744582_31744632_ 1.22e-03 12_[+1(3.04e-05)]_27
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
283 chr21_31768316_31768366_ 1.47e-03 [+1(3.67e-05)]_39
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
284 chr21_31914206_31914256_ 6.45e-04 15_[+1(1.61e-05)]_24
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
285 chr21_31933633_31933683_ 2.26e-03 4_[+1(5.65e-05)]_35
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
286 chr21_31962741_31962791_ 3.37e-02 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
287 chr21_31964683_31964733_ 1.95e-04 13_[+1(4.86e-06)]_26
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
288 chr21_31973364_31973414_ 5.73e-02 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
289 chr21_31992870_31992920_ 5.52e-04 16_[+1(1.38e-05)]_23
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
290 chr21_32185595_32185645_ 2.59e-04 18_[+1(6.48e-06)]_21
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
291 chr21_32202076_32202126_ 1.10e-04 13_[+1(2.74e-06)]_26
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
292 chr21_32253899_32253949_ 7.78e-04 17_[+1(1.95e-05)]_22
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
293 chr21_32410820_32410870_ 5.52e-04 21_[+1(1.38e-05)]_18
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
294 chr21_36411748_36411798_ 2.85e-03 22_[+1(7.15e-05)]_17
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
295 chr21_37838750_37838800_ 1.90e-02 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
296 chr21_45705687_45705737_ 8.63e-04 37_[+1(2.16e-05)]_2
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
297 chr21_45971413_45971463_ 1.95e-04 9_[+1(4.86e-06)]_30
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
298 chr21_45978668_45978718_ 2.59e-04 4_[+1(6.48e-06)]_35
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
299 chr21_45993530_45993580_ 1.95e-04 7_[+1(4.86e-06)]_32
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
300 chr21_46020421_46020471_ 7.78e-04 2_[+1(1.95e-05)]_37
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
301 chr21_46031920_46031970_ 8.89e-05 15_[+1(2.22e-06)]_24
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
302 chr21_46046964_46047014_ 1.80e-05 12_[+1(4.51e-07)]_27
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
303 chr21_46057197_46057247_ 1.95e-04 36_[+1(4.86e-06)]_3
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
304 chr21_46086869_46086919_ 5.54e-03 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
305 chr21_46102103_46102153_ 5.54e-03 50
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
306 chr21_47517957_47518007_ 2.59e-04 32_[+1(6.48e-06)]_7
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
307 chr21_47575506_47575556_ 1.22e-03 30_[+1(3.04e-05)]_9
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
308 --------------------------------------------------------------------------------
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
309
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
310 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
311
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
312
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
313 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
314 Stopped because requested number of motifs (1) found.
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
315 ********************************************************************************
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
316
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
317 CPU: bigsky
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
318
b386032d758d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
parents:
diff changeset
319 ********************************************************************************