Mercurial > repos > iuc > meme_dreme

comparison test-data/fimo_output_test3.xml @ 6:fd05b142b3a3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author iuc
date Thu, 29 Aug 2024 10:19:55 +0000
parents f33d77dcacce
children
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5:f33d77dcacce 6:fd05b142b3a3
1 <sequence-data num-sequences="1" num-residues="16569" />
2 <alphabet name="DNA" like="dna">
3 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
4 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
5 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
6 <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
7 <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
8 <letter id="V" symbol="V" equals="ACG" name="Not T"/>
9 <letter id="H" symbol="H" equals="ACT" name="Not G"/>
10 <letter id="D" symbol="D" equals="AGT" name="Not C"/>
11 <letter id="B" symbol="B" equals="CGT" name="Not A"/>
12 <letter id="M" symbol="M" equals="AC" name="Amino"/>
13 <letter id="R" symbol="R" equals="AG" name="Purine"/>
14 <letter id="W" symbol="W" equals="AT" name="Weak"/>
15 <letter id="S" symbol="S" equals="CG" name="Strong"/>
16 <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
17 <letter id="K" symbol="K" equals="GT" name="Keto"/>
18 </alphabet>
19 <motif name="ACTAAYH" alt="DREME-1" width="7" best-possible-match="ACTAACA"/>
20 <motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/>
21 <motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/>
22 <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/>
23 <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/>
24 <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/>
25 <background source="--uniform--">
26 <value letter="A">0.250</value>
27 <value letter="C">0.250</value>
28 <value letter="G">0.250</value>
29 <value letter="T">0.250</value>
30 </background>
31 <cisml-file>cisml.xml</cisml-file>
32 </fimo>