Mercurial > repos > iuc > meme_dreme
diff test-data/fimo_output_test3.xml @ 6:fd05b142b3a3 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author | iuc |
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date | Thu, 29 Aug 2024 10:19:55 +0000 |
parents | f33d77dcacce |
children |
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--- a/test-data/fimo_output_test3.xml Sat Apr 09 08:32:58 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,32 +0,0 @@ -<sequence-data num-sequences="1" num-residues="16569" /> -<alphabet name="DNA" like="dna"> -<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/> -<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/> -<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/> -<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/> -<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/> -<letter id="V" symbol="V" equals="ACG" name="Not T"/> -<letter id="H" symbol="H" equals="ACT" name="Not G"/> -<letter id="D" symbol="D" equals="AGT" name="Not C"/> -<letter id="B" symbol="B" equals="CGT" name="Not A"/> -<letter id="M" symbol="M" equals="AC" name="Amino"/> -<letter id="R" symbol="R" equals="AG" name="Purine"/> -<letter id="W" symbol="W" equals="AT" name="Weak"/> -<letter id="S" symbol="S" equals="CG" name="Strong"/> -<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/> -<letter id="K" symbol="K" equals="GT" name="Keto"/> -</alphabet> -<motif name="ACTAAYH" alt="DREME-1" width="7" best-possible-match="ACTAACA"/> -<motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/> -<motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/> -<motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/> -<motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/> -<motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/> -<background source="--uniform--"> -<value letter="A">0.250</value> -<value letter="C">0.250</value> -<value letter="G">0.250</value> -<value letter="T">0.250</value> -</background> -<cisml-file>cisml.xml</cisml-file> -</fimo>