Mercurial > repos > iuc > meme_fimo

annotate test-data/dreme1.xml @ 12:02f6ad791bbf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author iuc
date Wed, 25 Apr 2018 12:12:47 -0400
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12
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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1 <dreme version="4.12.0" release="Tue Jun 27 16:22:50 2017 -0700">
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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2 <model>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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3 <command_line>dreme -oc dreme_out -rna -norc -p dreme_test_sites.fa -e 0</command_line>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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4 <positives name="dreme test sites" count="1000" file="dreme_test_sites.fa" last_mod_date="Thu Apr 19 19:09:45 CEST 2018" />
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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5 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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6 <alphabet name="RNA" like="rna">
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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7 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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8 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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9 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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10 <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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11 <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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12 <letter id="V" symbol="V" equals="ACG" name="Not U"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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13 <letter id="H" symbol="H" equals="ACU" name="Not G"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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14 <letter id="D" symbol="D" equals="AGU" name="Not C"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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15 <letter id="B" symbol="B" equals="CGU" name="Not A"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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16 <letter id="M" symbol="M" equals="AC" name="Amino"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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17 <letter id="R" symbol="R" equals="AG" name="Purine"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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18 <letter id="W" symbol="W" equals="AU" name="Weak"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
iuc
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19 <letter id="S" symbol="S" equals="CG" name="Strong"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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20 <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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21 <letter id="K" symbol="K" equals="GU" name="Keto"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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22 </alphabet>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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23 <strands>none</strands>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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24 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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25 <stop evalue="0"/>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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26 <ngen>100</ngen>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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27 <add_pv_thresh>0.01</add_pv_thresh>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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28 <seed>1</seed>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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29 <host>ThinkPad-T450s</host>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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30 <when>Thu Apr 19 19:40:08 CEST 2018</when>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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31 </model>
02f6ad791bbf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
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32 <motifs>