Mercurial > repos > iuc > meme_fimo

comparison fimo_wrapper.py @ 9:40b8472e91ca draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit bcfc8451fa622a6bf3aa31fa1e308c394feefb38
author iuc
date Mon, 14 Nov 2016 13:17:22 -0500
parents cdcc4bb60bc3
children c470b36b592d
comparison
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8:53846f74a019 9:40b8472e91ca
42 42
43 43
44 def stop_err(msg): 44 def stop_err(msg):
45 sys.stderr.write(msg) 45 sys.stderr.write(msg)
46 sys.exit(1) 46 sys.exit(1)
47
47 48
48 parser = argparse.ArgumentParser() 49 parser = argparse.ArgumentParser()
49 parser.add_argument('--input_motifs', dest='input_motifs', help='MEME output formatted files for input to fimo') 50 parser.add_argument('--input_motifs', dest='input_motifs', help='MEME output formatted files for input to fimo')
50 parser.add_argument('--input_fasta', dest='input_fasta', help='Fassta sequence file') 51 parser.add_argument('--input_fasta', dest='input_fasta', help='Fassta sequence file')
51 parser.add_argument('--options_type', dest='options_type', help='Basic or Advance options') 52 parser.add_argument('--options_type', dest='options_type', help='Basic or Advance options')