Mercurial > repos > iuc > meme_meme

comparison test-data/streme_output_test1.xml @ 20:faa378fa0c81 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 89ee0af6e955ff964b7984d77ad536e0a9154278
author iuc
date Mon, 14 Jul 2025 21:33:26 +0000
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19:7ce0fe11b411 20:faa378fa0c81
1 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
2 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
3 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
4 <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
5 <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
6 <letter id="V" symbol="V" equals="ACG" name="Not T"/>
7 <letter id="H" symbol="H" equals="ACT" name="Not G"/>
8 <letter id="D" symbol="D" equals="AGT" name="Not C"/>
9 <letter id="B" symbol="B" equals="CGT" name="Not A"/>
10 <letter id="M" symbol="M" equals="AC" name="Amino"/>
11 <letter id="R" symbol="R" equals="AG" name="Purine"/>
12 <letter id="W" symbol="W" equals="AT" name="Weak"/>
13 <letter id="S" symbol="S" equals="CG" name="Strong"/>
14 <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
15 <letter id="K" symbol="K" equals="GT" name="Keto"/>
16 </alphabet>
17 <strands>both</strands>
18 <sequence_db A="0.245" C="0.255" G="0.255" T="0.245"/>
19 <background_frequencies source="--negatives--" order="2">
20 <alphabet_array>
21 <value letter_id="A">0.244</value>
22 <value letter_id="C">0.256</value>
23 <value letter_id="G">0.256</value>
24 <value letter_id="T">0.244</value>
25 </alphabet_array>
26 </background_frequencies>