Mercurial > repos > iuc > meme_meme

diff test-data/dreme_output_test2.txt @ 14:3f0dd362b755 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"
author iuc
date Wed, 11 Dec 2019 18:05:15 -0500
parents 57e5d9382f36
children 19237efe98d1
line wrap: on
line diff
--- a/test-data/dreme_output_test2.txt	Thu May 17 14:10:48 2018 -0400
+++ b/test-data/dreme_output_test2.txt	Wed Dec 11 18:05:15 2019 -0500
@@ -1,12 +1,7 @@
-# DREME 4.12.0
-#     command: dreme -o ./dreme_test2_out -p dreme_test_sites.fa -norc -rna -s 1 -e 1e-05 -g 100 -mink 4 -maxk 10
-#   positives: 1000 from dreme_test_sites.fa (Thu Apr 26 15:09:03 CEST 2018)
+# DREME 5.0.5
 #   negatives: 1000 from shuffled positives
-#        host: ThinkPad-T450s
-#        when: Thu May 03 13:22:11 CEST 2018
 
-MEME version 4.12.0
-
+MEME version 5.0.5
 ALPHABET "RNA" RNA-LIKE
 A "Adenine" CC0000
 C "Cytosine" 0000CC
@@ -27,20 +22,15 @@
 K "Keto" = GU
 T = U
 END ALPHABET
-
 Background letter frequencies (from dataset):
 A 0.221 C 0.245 G 0.221 U 0.312
-
-
 MOTIF UUYUCY DREME-1
-
 #             Word        Pos        Neg    P-value    E-value
 # BEST      UUYUCY        387        210   2.6e-018   3.3e-013
 #           UUUUCC        147         75   1.8e-007   2.2e-002
 #           UUUUCU        155         94   2.2e-005   2.8e+000
 #           UUCUCU         94         51   1.3e-004   1.7e+001
 #           UUCUCC         75         42   1.1e-003   1.4e+002
-
 letter-probability matrix: alength= 4 w= 6 nsites= 459 E= 3.3e-013
 0.000000 0.000000 0.000000 1.000000
 0.000000 0.000000 0.000000 1.000000
@@ -48,21 +38,14 @@
 0.000000 0.000000 0.000000 1.000000
 0.000000 1.000000 0.000000 0.000000
 0.000000 0.474946 0.000000 0.525054
-
-
 MOTIF YAGG DREME-2
-
 #             Word        Pos        Neg    P-value    E-value
 # BEST        YAGG        600        416   1.1e-016   1.4e-011
 #             CAGG        441        304   1.5e-010   1.8e-005
 #             UAGG        232        165   1.1e-004   1.3e+001
-
 letter-probability matrix: alength= 4 w= 4 nsites= 793 E= 1.4e-011
 0.000000 0.692308 0.000000 0.307692
 1.000000 0.000000 0.000000 0.000000
 0.000000 0.000000 1.000000 0.000000
 0.000000 0.000000 1.000000 0.000000
-
-
 # Stopping reason: E-value threshold exceeded
-#    Running time: 15.97 seconds