Mercurial > repos > iuc > meme_psp_gen

annotate test-data/fimo_output_test3.html @ 6:5f95d385a33c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:33:29 +0000
parents ff2f53a32d0e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
1 <td style="padding-right: 2em">background file name = --uniform--</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
2 <td style="padding-left: 5em; padding-right: 2em">alphabet = DNA</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
3 <td style="padding-left: 5em; padding-right: 2em">max stored scores = 100000</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
4 </tr> <tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
5 <td style="padding-right: 2em">allow clobber = false</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
6 <td style="padding-left: 5em; padding-right: 2em">compute q-values = true</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
7 <td style="padding-left: 5em; padding-right: 2em">parse genomic coord. = false</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
8 </tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
9 <tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
10 <td style="padding-right: 2em">text only = false</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
11 <td style="padding-left: 5em; padding-right: 2em">scan both strands = true</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
12 <td style="padding-left: 5em; padding-right: 2em">max strand = false</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
13 </tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
14 <tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
15 <td style="padding-right: 2em">threshold type = p-value</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
16 <td style="padding-left: 5em; padding-right: 2em">output theshold = 0.01</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
17 <td style="padding-left: 5em; padding-right: 2em">pseudocount = 0.1</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
18 </tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
19 <tr>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
20 <td style="padding-right: 2em">alpha = 1</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
21 <td style="padding-left: 5em; padding-right: 2em">verbosity = 2</td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
22 <td style="padding-left: 5em; padding-right: 2em"></td>
5f95d385a33c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 3
diff changeset
23 </tr>