Mercurial > repos > iuc > meme_psp_gen

comparison meme_psp_gen.xml @ 2:b48e673af4e8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
author iuc
date Thu, 17 May 2018 14:11:15 -0400
parents a0fa4efeeee3
children e24560178fad
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1:793225b11202 2:b48e673af4e8
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 ln -s '${primary_sequence}' meme_psp_input_pos.fa &&
9 ln -s '${control_sequence}' meme_psp_input_neg.fa &&
8 psp-gen 10 psp-gen
9 -pos '$primary_sequence' 11 -pos meme_psp_input_pos.fa
10 -neg '$control_sequence' 12 -neg meme_psp_input_neg.fa
11 -minw $adv.minw 13 -minw $adv.minw
12 -maxw $adv.maxw 14 -maxw $adv.maxw
13 $adv.alphabet 15 $adv.alphabet
14 #if str($adv.triples_cond.triples) == 'yes': 16 #if str($adv.triples_cond.triples) == 'yes':
15 -triples 17 -triples
82 <param name="control_sequence" value="meme_psp_protein_input.fasta" ftype="fasta"/> 84 <param name="control_sequence" value="meme_psp_protein_input.fasta" ftype="fasta"/>
83 <param name="alphabet" value="protein"/> 85 <param name="alphabet" value="protein"/>
84 <param name="report_scores" value="yes"/> 86 <param name="report_scores" value="yes"/>
85 <param name="verbose" value="-verbose"/> 87 <param name="verbose" value="-verbose"/>
86 <param name="non_commercial_use" value="NON_COMMERCIAL_USE"/> 88 <param name="non_commercial_use" value="NON_COMMERCIAL_USE"/>
87 <output name="output_psp" file="output.memepsp"/> 89 <output name="output_psp" file="meme_psp_output_test1.memepsp"/>
88 <output name="output_tabular" file="meme_psp_gen_reports_output.tabular" compare="contains"/> 90 <output name="output_tabular" file="meme_psp_output_test1.tabular"/>
89 </test> 91 </test>
90 </tests> 92 </tests>
91 <help> 93 <help>
92 94
93 .. class:: warningmark 95 .. class:: warningmark