Mercurial > repos > iuc > merge_metaphlan_tables

comparison merge_metaphlan_tables.xml @ 8:27250f92a01a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit f3a89af137b13715f9fb13383577aceb2c445ce6
author iuc
date Sat, 03 Dec 2022 10:42:15 +0000
parents 3f05bf162005
children e073891b2afc
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7:ab1a9a932182 8:27250f92a01a
25 <param name="inputs" value="SRS014464-Anterior_nares-abundances.tabular,SRS014464-Anterior_nares-abundances.tabular"/> 25 <param name="inputs" value="SRS014464-Anterior_nares-abundances.tabular,SRS014464-Anterior_nares-abundances.tabular"/>
26 <output name="output" ftype="tabular" > 26 <output name="output" ftype="tabular" >
27 <assert_contents> 27 <assert_contents>
28 <has_text text="k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens"/> 28 <has_text text="k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens"/>
29 <has_text text="dataset_"/> 29 <has_text text="dataset_"/>
30 <has_text text="NCBI_tax_id"/>
31 <has_text text="clade_name"/> 30 <has_text text="clade_name"/>
31 <has_line_matching expression="#.*" />
32 </assert_contents> 32 </assert_contents>
33 </output> 33 </output>
34 </test> 34 </test>
35 </tests> 35 </tests>
36 <help><![CDATA[ 36 <help><![CDATA[
37 What it does 37 What it does
38 ============ 38 ============
39 39
40 MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, 40 MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria,
41 Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. 41 Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) at the species-level.
42 42
43 This tool performs a table join on one or more tab-separated files with the predicted taxon relative abundances 43 This tool performs a table join on one or more tab-separated files with the predicted taxon relative abundances
44 that have been generated by MetaPhlAn. 44 that have been generated by MetaPhlAn.
45 ]]></help> 45 ]]></help>
46 <expand macro="citations"/> 46 <expand macro="citations"/>