Mercurial > repos > iuc > merge_metaphlan_tables

comparison merge_metaphlan_tables.xml @ 9:e073891b2afc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
author iuc
date Mon, 27 Feb 2023 06:59:58 +0000
parents 27250f92a01a
children 7f5d7b0e9884
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8:27250f92a01a 9:e073891b2afc
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="edam_ontology"/> 6 <expand macro="edam_ontology"/>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <version_command>merge_metaphlan_tables.py -v</version_command> 8 <version_command>metaphlan -v</version_command>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 merge_metaphlan_tables.py 10 merge_metaphlan_tables.py
11 #for $element in $inputs 11 #for $element in $inputs
12 '$element' 12 '$element'
13 #end for 13 #end for
14 > '$output' 14 > '$output'
15 ]]> 15 ]]>
16 </command> 16 </command>
17 <inputs> 17 <inputs>
18 <param name="inputs" type="data" format="tabular,txt" multiple="true" label="Predicted taxon relative abundance tables generaed by MetaPhlAn" /> 18 <param name="inputs" type="data" format="tabular,txt" multiple="true" label="Predicted taxon relative abundance tables generaed by MetaPhlAn"/>
19 </inputs> 19 </inputs>
20 <outputs> 20 <outputs>
21 <data name="output" format="tabular" label="${tool.name} on ${on_string}: Merged taxon relative abundance tables" /> 21 <data name="output" format="tabular" label="${tool.name} on ${on_string}: Merged taxon relative abundance tables"/>
22 </outputs> 22 </outputs>
23 <tests> 23 <tests>
24 <test expect_num_outputs="1"> 24 <test expect_num_outputs="1">
25 <param name="inputs" value="SRS014464-Anterior_nares-abundances.tabular,SRS014464-Anterior_nares-abundances.tabular"/> 25 <param name="inputs" value="SRS014464-Anterior_nares-abundances.tabular,SRS014464-Anterior_nares-abundances.tabular"/>
26 <output name="output" ftype="tabular" > 26 <output name="output" ftype="tabular">
27 <assert_contents> 27 <assert_contents>
28 <has_text text="k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens"/> 28 <has_text text="k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens"/>
29 <has_text text="dataset_"/> 29 <has_text text="dataset_"/>
30 <has_text text="clade_name"/> 30 <has_text text="clade_name"/>
31 <has_line_matching expression="#.*" /> 31 <has_line_matching expression="#.*"/>
32 </assert_contents> 32 </assert_contents>
33 </output> 33 </output>
34 </test> 34 </test>
35 </tests> 35 </tests>
36 <help><![CDATA[ 36 <help><![CDATA[