Mercurial > repos > iuc > merge_metaphlan_tables

diff merge_metaphlan_tables.xml @ 9:e073891b2afc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 08ec37116aab4268fdb93f175b60e50a0bbfafb2
author iuc
date Mon, 27 Feb 2023 06:59:58 +0000
parents 27250f92a01a
children 7f5d7b0e9884
line wrap: on
line diff
--- a/merge_metaphlan_tables.xml	Sat Dec 03 10:42:15 2022 +0000
+++ b/merge_metaphlan_tables.xml	Mon Feb 27 06:59:58 2023 +0000
@@ -5,7 +5,7 @@
     </macros>
     <expand macro="edam_ontology"/>
     <expand macro="requirements"/>
-    <version_command>merge_metaphlan_tables.py -v</version_command>
+    <version_command>metaphlan -v</version_command>
     <command detect_errors="aggressive"><![CDATA[
 merge_metaphlan_tables.py
     #for $element in $inputs
@@ -15,20 +15,20 @@
 ]]>
     </command>
     <inputs>
-        <param name="inputs" type="data" format="tabular,txt" multiple="true" label="Predicted taxon relative abundance tables generaed by MetaPhlAn" />
+        <param name="inputs" type="data" format="tabular,txt" multiple="true" label="Predicted taxon relative abundance tables generaed by MetaPhlAn"/>
     </inputs>
     <outputs>
-        <data name="output" format="tabular" label="${tool.name} on ${on_string}: Merged taxon relative abundance tables" />
+        <data name="output" format="tabular" label="${tool.name} on ${on_string}: Merged taxon relative abundance tables"/>
     </outputs>
     <tests>
         <test expect_num_outputs="1">
             <param name="inputs" value="SRS014464-Anterior_nares-abundances.tabular,SRS014464-Anterior_nares-abundances.tabular"/>
-            <output name="output" ftype="tabular" >
+            <output name="output" ftype="tabular">
                 <assert_contents>
                     <has_text text="k__Bacteria|p__Actinobacteria|c__Actinobacteria|o__Corynebacteriales|f__Corynebacteriaceae|g__Corynebacterium|s__Corynebacterium_accolens"/>
                     <has_text text="dataset_"/>
                     <has_text text="clade_name"/>
-                    <has_line_matching expression="#.*" />
+                    <has_line_matching expression="#.*"/>
                 </assert_contents>
             </output>
         </test>