Mercurial > repos > iuc > migmap

annotate test-data/test_out_of_frame.out @ 3:587fa797ede9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit ce007cd86035d1fdbcfa7105b593dcadc3e2cf30"
author iuc
date Thu, 05 Dec 2019 05:58:28 -0500
parents b2f1cf977ca9
children
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b2f1cf977ca9 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
1 read.header cdr3nt cdr3aa cdr.insert.qual mutations.qual v.segment d.segment j.segment cdr1.start.in.read cdr1.end.in.read cdr2.start.in.read cdr2.end.in.read cdr3.start.in.read cdr3.end.in.read v.end.in.cdr3 d.start.in.cdr3 d.end.in.cdr3 j.start.in.cdr3 v.del d.del.5 d.del.3 j.del mutations.nt.FR1 mutations.nt.CDR1 mutations.nt.FR2 mutations.nt.CDR2 mutations.nt.FR3 mutations.nt.CDR3 mutations.nt.FR4 rc complete has.cdr3 in.frame no.stop mutations.aa.FR1 mutations.aa.CDR1 mutations.aa.FR2 mutations.aa.CDR2 mutations.aa.FR3 mutations.aa.CDR3 mutations.aa.FR4 pol.v pol.d.5 pol.d.3 pol.j canonical contignt
b2f1cf977ca9 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
2 >CGTTCAGTTCTTTTGCG|PRCONS=Human-IGHD|SEQORIENT=F|CREGION=Human-IGHD-InternalC|CONSCOUNT=1|DUPCOUNT=1 TGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGG CAPACGGDtg?L*DNWFDPW IIIIIIII IIIIIIIIIII IGHV7-4-1*01 IGHD2-21*01 IGHJ5*01 174 198 249 273 384 437 6 11 30 33 3 6 3 0 S7:A>G,S18:T>G,S26:T>G,S49:C>A,S54:A>T,S58:T>G,S69:G>C S94:A>C S115:A>C S332:T>C S343:A>G false true true false false S2:Q>R,S6:S>A,S8:S>S,S16:S>*,S18:K>*,S19:V>G,S23:A>P S31:Y>S S38:Q>P S110:T>T S114:K>R -1 -1 -1 -1 true CAGGTGCGGCTGGTGCAAGCTGGGTCGGAGTTGAAGAAGCCTGGGGCCTAAGTGTAGGGTTCCTGCAAGCCTTCTGGATACACCTTCACTAGCTCTGCTATGAATTGGGTGCGACCGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAACACCAACACTGGGAACCCAACGTATGCCCAGGGCTTCACAGGACGGTTTGTCTTCTCCTTGGACACCTCTGTCAGCACGGCATATCTGCAGATCTGCAGCCTAAAGGCTGAGGACACTGCCGTGTATTACTGTGCGCCGGCTTGTGGTGGTGATTGCTATAGGACAACTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGCACCCACCAAGGCTCCGGATGTGTTCC