Mercurial > repos > iuc > miniasm

changeset 3:73a3846701e1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniasm commit 5b819c9a19a38ebdd60bcd0ea3f530bf60a688bb"
author iuc
date Fri, 02 Apr 2021 20:20:44 +0000
parents 8dee0218ac7d
children a7b889b90140
files miniasm.xml test-data/mini_reads.fq.gz
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/miniasm.xml	Thu Sep 03 16:20:16 2020 +0000
+++ b/miniasm.xml	Fri Apr 02 20:20:44 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="miniasm" name="miniasm" version="@TOOL_VERSION@+galaxy0">
+<tool id="miniasm" name="miniasm" version="@TOOL_VERSION@+galaxy1">
     <description>Ultrafast de novo assembly for long noisy reads </description>
     <macros>
         <token name="@TOOL_VERSION@">0.3</token>
@@ -25,7 +25,7 @@
 '$paf' > '$gfa'
     ]]></command>
     <inputs>
-        <param name="readFile" type="data" format="fastq,fasta" label="Sequence Reads" />
+        <param name="readFile" type="data" format="fastq,fastq.gz,fasta,fasta.gz" label="Sequence Reads" />
         <param name="paf" type="data" format="tabular" label="PAF file" help="Pairwise mapping format" />
         <section name="preselection" title="Preselection options">
             <param argument="-m" name="minMatch" type="integer" value="100" label="Drop mappings having less than this number of matching bases"
@@ -65,7 +65,7 @@
             <output name="gfa" file="mini_reads.gfa"/>
         </test>
         <test>
-            <param name="readFile" value="mini_reads.fq"/>
+            <param name="readFile" value="mini_reads.fq.gz"/>
             <param name="minMatch" value="99"/>
             <param name="minIden" value="0.04"/>
             <param name="minSpan" value="999"/>
Binary file test-data/mini_reads.fq.gz has changed