Mercurial > repos > iuc > mitos2
view macros.xml @ 8:73b018c57e96 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit a3f57ea5cedcf7ceb70ea815e965325fab6cc90c
author | iuc |
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date | Sat, 23 Mar 2024 14:08:35 +0000 |
parents | e95d52d295d7 |
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<macros> <token name="@COMMON_HELP@"> <![CDATA[ @MITOS_NAME@ does a de-novo annotation of a given metazoan mitochondrial sequence. **Inputs** - A fasta formatted sequence - @MITOS_NAME@ processes only FASTA files containing a single sequence. If you have a FASTA file with multiple sequences you may use the tool *Split Fasta files into a collection*. The resulting collection can then used as input to @MITOS_NAME@. - The correct genetic code needs to be selected - Reference data needs to be selected (can be provided by an administrator using the MITOS data manager) **Outputs** By default the annotation in BED format. Several other outputs can be enabled: - The annotation can be given as well in GFF, SEQ, or mito (a custom tabular format) - zipped raw data (all files computed during the run, e.g. BLAST and cmsearch outputs) - protein and ncRNA prediction plots visualize the predicted genes and their qualities - ncRNA structure plots (secondary structures of the predicted ncRNAs) See http://mitos.bioinf.uni-leipzig.de/help.py Contact mitos (at) bioinf (dash) uni (dash) leipzig (dot) de in case of problems. ]]></token> </macros>