Mercurial > repos > iuc > mitos2
changeset 9:c8ac28e8ac44 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mitos commit 921fa90438b4ce2e9cf9c4129568f4036c318d82
| author | iuc |
|---|---|
| date | Thu, 02 May 2024 09:07:14 +0000 |
| parents | 73b018c57e96 |
| children | |
| files | mitos2.xml test-data/mitos2_NC_012920.gff |
| diffstat | 2 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/mitos2.xml Sat Mar 23 14:08:35 2024 +0000 +++ b/mitos2.xml Thu May 02 09:07:14 2024 +0000 @@ -3,7 +3,7 @@ <macros> <import>macros.xml</import> <token name="@MITOS_NAME@">MITOS2</token> - <token name="@TOOL_VERSION@">2.1.8</token> + <token name="@TOOL_VERSION@">2.1.9</token> <token name="@VERSION_SUFFIX@">0</token> </macros> <xrefs> @@ -64,11 +64,15 @@ </param> <param argument="--code" label="Genetic code" type="select"> <option value="2">Vertebrate (2)</option> + <option value="3">Yeast (3)</option> <option value="4">Mold, Protozoan, Coelenteral (4)</option> <option value="5">Invertebrate (5)</option> <option value="9">Echinoderm, Flatworm (9)</option> <option value="13">Ascidian (13)</option> <option value="14">Alternative Flatworm (14)</option> + <option value="21">Trematode (21)</option> + <option value="24">Rhabdopleuridae (24)</option> + <option value="33">Cephalodiscidae (33)</option> </param> <param argument="--refseqver" label="Reference data" type="select" help="Contact the administrator of this Galaxy instance if you miss reference data"> <options from_data_table="mitos">
--- a/test-data/mitos2_NC_012920.gff Sat Mar 23 14:08:35 2024 +0000 +++ b/test-data/mitos2_NC_012920.gff Thu May 02 09:07:14 2024 +0000 @@ -44,7 +44,7 @@ NC_012920\tmitfi\ttRNA\t12266\t12336\t\.\t\+\t\.\tID=transcript_trnL1\(tag\);Name=trnL1\(tag\);Parent=gene_trnL1\(tag\);gene_id=trnL1\(tag\) NC_012920\tmitfi\texon\t12266\t12336\t0\.026000000536441803\t\+\t\.\tParent=transcript_trnL1;Name=trnL1 NC_012920\tmitos\tgene\t14149\t14670\t\.\t-\t\.\tID=gene_nad6;Name=nad6;gene_id=nad6 -NC_012920\tmitos\texon\t14149\t14670\t39\.7\t-\t2\.0\tParent=transcript_nad6;Name=nad6 +NC_012920\tmitos\texon\t14149\t14670\t39\.7\t-\t0\tParent=transcript_nad6;Name=nad6 NC_012920\tmitfi\tncRNA_gene\t14674\t14742\t\.\t-\t\.\tID=gene_trnE;Name=trnE;gene_id=trnE NC_012920\tmitfi\ttRNA\t14674\t14742\t\.\t-\t\.\tID=transcript_trnE\(ttc\);Name=trnE\(ttc\);Parent=gene_trnE\(ttc\);gene_id=trnE\(ttc\) NC_012920\tmitfi\texon\t14674\t14742\t0\.03200000151991844\t-\t\.\tParent=transcript_trnE;Name=trnE