Mercurial > repos > iuc > moabs
changeset 0:26d7ec4af119 draft
"planemo upload for repository https://github.com/sunnyisgalaxy/moabs commit fca680a439f168971afc9944ccbbdd9b3b65c845"
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/all_fasta.loc.sample Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,18 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. This file has the format (white space characters are +#TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +# +#apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa +#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa +#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa +# +#Your all_fasta.loc file should contain an entry for each individual +#fasta file. So there will be multiple fasta files for each build, +#such as with hg19 above. +#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@VERSION@">moabs</requirement> + </requirements> + </xml> + + <token name="@VERSION@">1.3.4.6</token> + + <token name="@DMRExample@"> + +Example:: + + chr11 316 1705 - 35 30 5 -1 + chr11 3052 3674 - 17 16 1 -1 + chr11 18599 19013 - 9 7 3 -1 + chr11 19120 19931 - 39 39 0 -1 + chr11 22138 22618 - 14 12 3 -1 + chr11 28140 28356 - 4 4 0 -1 + </token> + + <xml name="citations"> + <citations> + <citation type="doi">10.1186/gb-2014-15-2-r38</citation> + </citations> + </xml> + +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/moabs.xml Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,465 @@ +<tool id="moabs" name="MOABS" profile="16.04" version="@VERSION@"> + <description>MOdel based Analysis of Bisulfite Sequencing data</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <command detect_errors="exit_code"> + <![CDATA[ + #if str( $mcomp_advanced.doComp.compare_selector ) == "0": + cp -f '$mcomp_advanced.doComp.compFile' comp.g1.vs.g2.txt && + #end if + moabs -v 1 --def MMAP.p="\${GALAXY_SLOTS:-4}" --def MCALL.p="\${GALAXY_SLOTS:-4}" --def MCOMP.p="\${GALAXY_SLOTS:-4}" --cf '$cfg_file' && + #if "1" in $output_selector: + cp -f dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr '$output1' && + #end if + #if "2" in $output_selector: + cp -f comp.g1.vs.g2.txt '$output2' && + #end if + echo Done + ]]> + </command> + <configfiles> + <configfile name="cfg_file"> + #if str( $reference_source.reference_source_selector ) == "history": + #set $reference_fasta_filename = $reference_source.ref_file + #else: + #set $reference_fasta_filename = $reference_source.ref_file.fields.path + #end if + [INPUT] + #for $i, $s in enumerate( $g1_fastq ) + #if str( $s.fastq_input.fastq_input_selector ) == "paired": + s1_r${i+1}_1='$s.fastq_input.fastq_input1' + s1_r${i+1}_2='$s.fastq_input.fastq_input2' + #elif str( $s.fastq_input.fastq_input_selector ) == "paired_collection": + s1_r${i+1}_1='$s.fastq_input.fastq_input1.forward' + s1_r${i+1}_2='$s.fastq_input.fastq_input1.reverse' + #else: + s1_r${i+1}='$s.fastq_input.fastq_input1' + #end if + #end for + + #for $i, $s in enumerate( $g2_fastq ) + #if str( $s.fastq_input.fastq_input_selector ) == "paired": + s2_r${i+1}_1='$s.fastq_input.fastq_input1' + s2_r${i+1}_2='$s.fastq_input.fastq_input2' + #elif str( $s.fastq_input.fastq_input_selector ) == "paired_collection": + s2_r${i+1}_1='$s.fastq_input.fastq_input1.forward' + s2_r${i+1}_2='$s.fastq_input.fastq_input1.reverse' + #else: + s2_r${i+1}='$s.fastq_input.fastq_input1' + #end if + #end for + + [TASK] + Program=MMAP + Label=g1,g2 + Parallel=NONE + + [MMAP] + Path=bsmap + d='${reference_fasta_filename}' + #if str( $bsmap_advanced.bsmap_mismatch.bsmap_mismatch_selector ) != "0": + v=$bsmap_advanced.bsmap_mismatch.v + #end if + n=$bsmap_advanced.n + r=$bsmap_advanced.r + R='' + + [MCALL] + Path=mcall + r='${reference_fasta_filename}' + + [MCOMP] + Path=mcomp + reference='${reference_fasta_filename}' + doComp=$mcomp_advanced.doComp.compare_selector + </configfile> + </configfiles> + + <inputs> + <conditional name="reference_source"> + <param name="reference_source_selector" type="select" label="Will you select a reference genome from your history or use a cache FASTA?" help="Cached FASTA"> + <option value="cached">Use a cached genome FASTA</option> + <option value="history">Use a genome FASTA from history</option> + </param> + <when value="cached"> + <param name="ref_file" type="select" label="Using reference genome" help="Select genome from the list"> + <options from_data_table="all_fasta"> + <filter type="sort_by" column="2" /> + <validator type="no_options" message="No genome FASTA are available" /> + </options> + </param> + </when> + <when value="history"> + <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the reference sequence" help="You can upload a FASTA sequence to the history and use it as reference" /> + </when> + </conditional> + <repeat name="g1_fastq" title="Group1: fastq files" min="1"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" type="select" label="Single or Paired-end reads" help="Select between paired and single end data"> + <option value="single">Single</option> + <option value="paired">Paired</option> + <option value="paired_collection">Paired Collection</option> + </param> + <when value="paired"> + <param name="fastq_input1" type="data" format="fastqsanger,fastqsanger.gz" label="Select first set of reads" help="Specify dataset with forward reads"/> + <param name="fastq_input2" type="data" format="fastqsanger,fastqsanger.gz" label="Select second set of reads" help="Specify dataset with reverse reads"/> + </when> + <when value="single"> + <param name="fastq_input1" type="data" format="fastqsanger,fastqsanger.gz" label="Select fastq dataset" help="Specify dataset with single reads"/> + </when> + <when value="paired_collection"> + <param name="fastq_input1" format="fastqsanger,fastqsanger.gz" type="data_collection" collection_type="paired" label="Select a paired collection" help="See help section for an explanation of dataset collections"/> + </when> + </conditional> + </repeat> + <repeat name="g2_fastq" title="Group2: fastq files" min="1"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" type="select" label="Single or Paired-end reads" help="Select between paired and single end data"> + <option value="single">Single</option> + <option value="paired">Paired</option> + <option value="paired_collection">Paired Collection</option> + </param> + <when value="paired"> + <param name="fastq_input1" type="data" format="fastqsanger,fastqsanger.gz" label="Select first set of reads" help="Specify dataset with forward reads"/> + <param name="fastq_input2" type="data" format="fastqsanger,fastqsanger.gz" label="Select second set of reads" help="Specify dataset with reverse reads"/> + </when> + <when value="single"> + <param name="fastq_input1" type="data" format="fastqsanger,fastqsanger.gz" label="Select fastq dataset" help="Specify dataset with single reads"/> + </when> + <when value="paired_collection"> + <param name="fastq_input1" format="fastqsanger,fastqsanger.gz" type="data_collection" collection_type="paired" label="Select a paired collection" help="See help section for an explanation of dataset collections"/> + </when> + </conditional> + </repeat> + <section name="bsmap_advanced" title="Advanced options for BSMAP" expanded="False"> + <conditional name="bsmap_mismatch"> + <param name="bsmap_mismatch_selector" type="select" label="Set the mismatch rate or number?" help=""> + <option value="0">Do not set</option> + <option value="1">Set the mismatch rate</option> + <option value="2">Set the mismatch number</option> + </param> + <when value="1"> + <param argument="-v" type="float" value="0.08" min="0" max="1" label="Mismatch rate" help="The mismatch rate w.r.t to the read length"/> + </when> + <when value="2"> + <param argument="-v" type="integer" value="3" min="0" label="Mismatch number" help="The maximum number of mismatches allowed on a read"/> + </when> + </conditional> + <param argument="-n" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Mapping to four strands?" help="Yes: map SE or PE reads to all 4 strands, i.e. ++, +-, -+, --; No: only map to 2 forward strands, i.e. BSW(++) and BSC(-+)"/> + <param argument="-r" type="select" label="How to report repeat hits" help="0=none(unique hit/pair); 1=random one; 2=all(slow)"> + <option value="0" selected="true">0</option> + <option value="1">1</option> + <option value="2">2</option> + </param> + </section> + <section name="mcomp_advanced" title="Advanced options for MCOMP" expanded="False"> + <conditional name="doComp"> + <param name="compare_selector" type="select" label="Run the comparison or not" help="Yes: compare; No: do not compare, using the comparison result by `-c`"> + <option value="1">Yes</option> + <option value="0">No</option> + </param> + <when value="0"> + <param argument="-c" name="compFile" type="data" format="txt" label="Input comparison results" help="Previously generated comparison file from history"/> + </when> + </conditional> + </section> + <param name="output_selector" type="select" multiple="true" optional="true" label="Select output files" help=""> + <option value="1"> dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr </option> + <option value="2"> comp.g1.vs.g2.txt </option> + <option value="3"> BAM files </option> + <option value="4"> Methylation calling BED files </option> + </param> + </inputs> + <outputs> + <data name="output1" format="interval" label="${tool.name} on ${on_string} : dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr"> + <filter> "1" in output_selector </filter> + </data> + <data name="output2" format="interval" label="${tool.name} on ${on_string} : comp.g1.vs.g2.txt"> + <filter> "2" in output_selector </filter> + </data> + <collection name="output_collection_bam" type="list" label="BAM files"> + <filter> "3" in output_selector </filter> + <discover_datasets pattern="(?P<designation>.+\.bam$)" ext='bam'/> + </collection> + <collection name="output_collection_bed" type="list" label="Methylation calling BED files"> + <filter> "4" in output_selector </filter> + <discover_datasets pattern="(?P<designation>g[12]\.G\.bed$)" ext='interval'/> + </collection> + </outputs> + <tests> + <test> + <!-- test single-end reads --> + <param name="reference_source_selector" value="history"/> + <param name="ref_file" ftype="fasta" value="chr11.fa"/> + <repeat name="g1_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="WTPE1.fastq.gz"/> + </conditional> + </repeat> + <repeat name="g1_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="WTPE2.fastq.gz"/> + </conditional> + </repeat> + <repeat name="g2_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="TKO2PE1.fastq.gz"/> + </conditional> + </repeat> + <repeat name="g2_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="TKO2PE2.fastq.gz"/> + </conditional> + </repeat> + <conditional name="doComp"> + <param name="compare_selector" value="0"/> + <param name="compFile" value="SE_comp.g1.vs.g2.txt"/> + </conditional> + <!-- + <conditional name="doComp"> + <param name="compare_selector" value="1"/> + </conditional> + --> + <param name="output_selector" value="1,2,3,4"/> + <output name="output1" file="SE_dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr" ftype="interval" lines_diff="1"/> + <output name="output2" file="SE_comp.g1.vs.g2.txt" ftype="interval" lines_diff="1"/> + <output_collection name="output_collection_bam" count="4"> + <element name="g1_r1.bam" file="SE_g1_r1.bam" compare="sim_size"/> + <element name="g1_r2.bam" file="SE_g1_r2.bam" compare="sim_size"/> + <element name="g2_r1.bam" file="SE_g2_r1.bam" compare="sim_size"/> + <element name="g2_r2.bam" file="SE_g2_r2.bam" compare="sim_size"/> + </output_collection> + <output_collection name="output_collection_bed" count="2"> + <element name="g1.G.bed" file="SE_g1.G.bed" ftype="interval" lines_diff="1"/> + <element name="g2.G.bed" file="SE_g2.G.bed" ftype="interval" lines_diff="1"/> + </output_collection> + </test> + <test> + <!-- test paired-end reads --> + <param name="reference_source_selector" value="history"/> + <param name="ref_file" ftype="fasta" value="seg.fa"/> + <repeat name="g1_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="paired"/> + <param name="fastq_input1" value="6_all_1.fq.gz"/> + <param name="fastq_input2" value="6_all_2.fq.gz"/> + </conditional> + </repeat> + <repeat name="g2_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="paired"/> + <param name="fastq_input1" value="8_all_1.fq.gz"/> + <param name="fastq_input2" value="8_all_2.fq.gz"/> + </conditional> + </repeat> + <conditional name="doComp"> + <param name="compare_selector" value="0"/> + <param name="compFile" value="PE_comp.g1.vs.g2.txt"/> + </conditional> + <!-- + <conditional name="doComp"> + <param name="compare_selector" value="1"/> + </conditional> + --> + <param name="output_selector" value="1,2"/> + <output name="output1" file="PE_dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr" ftype="interval" lines_diff="1"/> + <output name="output2" file="PE_comp.g1.vs.g2.txt" ftype="interval" lines_diff="1"/> + </test> + <test> + <!-- test paired collection --> + <param name="reference_source_selector" value="history"/> + <param name="ref_file" ftype="fasta" value="seg.fa"/> + <repeat name="g1_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="paired_collection"/> + <param name="fastq_input1"> + <collection type="paired"> + <element name="forward" value="6_all_1.fq.gz" /> + <element name="reverse" value="6_all_2.fq.gz" /> + </collection> + </param> + </conditional> + </repeat> + <repeat name="g2_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="paired_collection"/> + <param name="fastq_input1"> + <collection type="paired"> + <element name="forward" value="8_all_1.fq.gz" /> + <element name="reverse" value="8_all_2.fq.gz" /> + </collection> + </param> + </conditional> + </repeat> + <conditional name="doComp"> + <param name="compare_selector" value="0"/> + <param name="compFile" value="PE_comp.g1.vs.g2.txt"/> + </conditional> + <!-- + <conditional name="doComp"> + <param name="compare_selector" value="1"/> + </conditional> + --> + <param name="output_selector" value="1,2"/> + <output name="output1" file="PE_dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr" ftype="interval" lines_diff="1"/> + <output name="output2" file="PE_comp.g1.vs.g2.txt" ftype="interval" lines_diff="1"/> + </test> + <test> + <!-- test data table reference --> + <param name="reference_source_selector" value="cached"/> + <param name="ref_file" value="chr11"/> + <repeat name="g1_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="WTPE1.fastq.gz"/> + </conditional> + </repeat> + <repeat name="g1_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="WTPE2.fastq.gz"/> + </conditional> + </repeat> + <repeat name="g2_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="TKO2PE1.fastq.gz"/> + </conditional> + </repeat> + <repeat name="g2_fastq"> + <conditional name="fastq_input"> + <param name="fastq_input_selector" value="single"/> + <param name="fastq_input1" value="TKO2PE2.fastq.gz"/> + </conditional> + </repeat> + <conditional name="doComp"> + <param name="compare_selector" value="0"/> + <param name="compFile" value="SE_comp.g1.vs.g2.txt"/> + </conditional> + <!-- + <conditional name="doComp"> + <param name="compare_selector" value="1"/> + </conditional> + --> + <param name="output_selector" value="1,2"/> + <output name="output1" file="SE_dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr" ftype="interval" lines_diff="1"/> + <output name="output2" file="SE_comp.g1.vs.g2.txt" ftype="interval" lines_diff="1"/> + </test> + </tests> + <help> + <![CDATA[ +**MOABS: MOdel based Analysis of Bisulfite Sequencing data** + +MOABS is a comprehensive, accurate and efficient solution for analysis of large +scale base-resolution DNA methylation data, bisulfite sequencing or single +molecule direct sequencing. + +MOABS seamlessly integrates alignment, methylation calling, identification of +hypomethylation for one sample and differential methylation for multiple +samples, and other downstream analysis. + +For more information, check https://github.com/sunnyisgalaxy/moabs. + +----- + +**Input files** + +MOABS needs to input Bisulfite sequencing reads in two groups of interest, e.g. +KO vs WT. Each group of reads may have combined sequencing library, i.e. +single-end reads and/or paired-end reads. Multiple replicates can be specified in each group. + +**Outputs** + +Four output files can be selected to report, namely + + 1. **DMR region file** - the major result file + 2. **Comparison file between two groups** - the intermediate comparion result + 3. **BAM files** - intermediate BAM files + 4. **Methylation BED files** - intermediate methylation BED files + +----- + +MOABS will detect differential methylated regions (DMRs) using the input BS-Seq +reads. The output file is a tab-delimited text file (not strictly a BED +format), representing DMRs. It has 8 columns as below. + +chrom<TAB>start<TAB>end<TAB>methylation_state<TAB>CpGsites<TAB>DMCcount<TAB>nonDMCcount<TAB>hidden_state + + 1. **chrom** - The chromosome of the region. + 2. **start** - The start genomic locus of the region. + 3. **end** - The end genomic locus of the region. + 4. **methylation_state** - The methylation state of the region, "+"/"-" representing hyper- or hypo-methylation regions. + 5. **CpGsites** - Total number of CpG sites in the region. + 6. **DMCcount** - The number of differential methylated CpG sites (DMCs) in the region. + 7. **nonDMCcount** - The number of non-DMCs in the region. + 8. **hidden_state** - The hidden state prediced by Hidden Markov Model (HMM), "1"/"-1" representing hyper- or hypo-methylation states. + +For example, six DMRs are identified in the following format. + +@DMRExample@ + +----- + +The intermediate comparison file summarizes methylation ratio comparison +results on CpG sites. It has 19 columns as below. + + 1. **chrom** - The chromosome of the GpG site. + 2. **start** - The start position of the site. + 3. **end** - The end position of the site. + 4. **single** - The next two columns are attributes for the single position. + 5. **totalC_0** - Total number of Cs in the first group. + 6. **nominalRatio_0** - Nominal methylation ratio in the first group. + 7. **ratioCI_0** - The confidence interval of the methylation ratio in the first group. + 8. **single** - The next two columns are attributes for the single position. + 9. **totalC_1** - Total number of Cs in the second group. + 10. **nominalRatio_1** - Nominal methylation ratio in the second group. + 11. **ratioCI_1** - The confidence interval of the methylation ratio in the second group. + 12. **pair** - The next three columns are attributes for pairs of groups. + 13. **nominalDif_1-0** - Nominal difference of methylation ratio between group 1 and group 0. + 14. **credibleDif_1-0** - Credible methylation difference between group 1 and group 0. + 15. **difCI_1-0** - Difference of confidence intervals between group 1 and group 0. + 16. **p_sim** - The next column is the simulation p-value. + 17. **p_sim_1_v_0** - Simulation p-value between group 1 and group 0. + 18. **p_fet** - The next column is the FET p-value. + 19. **p_fet_1_v_0** - FET p-value between group 1 and group 0. + +The comparison result file can be reused for DMR calling. + +----- + +BAM files are intermediate mapping results of input reads to the referene +genome. These BAM files can be reused in downstream methylation analysis. + +----- + +Methylation calling BED files are intermediate methylation calling results of +Cs in two groups of input reads. These methyation calling results can be easily +reused in downstream DMR calling and visualization. The BED file has 15 columns +as below. + + 1. **chrom** - The chromosome of the site. + 2. **start** - The start position of the site. + 3. **end** - The end position of the site. + 4. **ratio** - Methylation ratio in the site + 5. **totalC** - Total number of reads in current Cs. + 6. **methC** - Methylated Cs. + 7. **strand** - The strand information for prevous three columns. + 8. **next** - The next base. + 9. **Plus** - Next two columns are for forward strand. + 10. **totalC** - Total number of Cs. + 11. **methC** - Methylated Cs. + 12. **Minus** - Next two columns are for reverse strand. + 13. **totalC** - Total number of Cs. + 14. **methC** - Methylated Cs. + 15. **localSeq** - Local sequences. + +]]> + </help> + <expand macro="citations"/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/PE_comp.g1.vs.g2.txt Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,211 @@ +#chrom start end single: totalC_0 nominalRatio_0 ratioCI_0 single: totalC_1 nominalRatio_1 ratioCI_1 pair: nominalDif_1-0 credibleDif_1-0 difCI_1-0 p_sim: p_sim_1_v_0 p_fet: p_fet_1_v_0 +seg 87 89 single: 6 1 0.652,1 single: 10 0.2 0,0.47 pair: -0.8 -0.327 -0.857,-0.327 p_acc: 0.000318 p_fet: 0.00699 +seg 152 154 single: 4 1 0.549,1 single: 9 0.333 0.0575,0.609 pair: -0.667 -0.113 -0.761,-0.113 p_acc: 0.0035 p_fet: 0.0699 +seg 253 255 single: NA NA NA,NA single: 9 0 0,0.259 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 255 257 single: NA NA NA,NA single: 10 0 0,0.238 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 258 260 single: 3 1 0.473,1 single: 13 0.231 0,0.466 pair: -0.769 -0.165 -0.809,-0.165 p_acc: 0.00236 p_fet: 0.0357 +seg 331 333 single: 6 0.667 0.341,0.992 single: 22 0.227 0.0499,0.405 pair: -0.439 -0.058 -0.66,-0.058 p_acc: 0.00636 p_fet: 0.0638 +seg 468 470 single: NA NA NA,NA single: 7 0.143 0,0.471 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 490 492 single: NA NA NA,NA single: 3 0.333 0,0.751 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 630 632 single: 3 1 0.473,1 single: 5 0 0,0.393 pair: -1 -0.271 -1,-0.271 p_acc: 0.000954 p_fet: 0.0179 +seg 638 640 single: 3 0.667 0.249,1 single: 5 0.6 0.264,0.936 pair: -0.0667 -0 -0.461,0.418 p_acc: 0.0286 p_fet: 1 +seg 641 643 single: 4 1 0.549,1 single: 5 0.4 0.064,0.736 pair: -0.6 -0.0122 -0.748,-0.0122 p_acc: 0.00715 p_fet: 0.167 +seg 645 647 single: 4 1 0.549,1 single: 8 1 0.717,1 pair: 0 0 -0.183,0.374 p_acc: 0.067 p_fet: 1 +seg 666 668 single: 4 1 0.549,1 single: 9 0.667 0.391,0.942 pair: -0.333 -0 -0.506,0.15 p_acc: 0.021 p_fet: 0.497 +seg 685 687 single: 3 1 0.473,1 single: 8 0 0,0.283 pair: -1 -0.342 -1,-0.342 p_acc: 0.000364 p_fet: 0.00606 +seg 689 691 single: 4 1 0.549,1 single: 9 0.667 0.391,0.942 pair: -0.333 -0 -0.506,0.15 p_acc: 0.021 p_fet: 0.497 +seg 697 699 single: 3 1 0.473,1 single: 7 0.571 0.27,0.872 pair: -0.429 -0 -0.595,0.156 p_acc: 0.017 p_fet: 0.475 +seg 699 701 single: 3 1 0.473,1 single: 9 1 0.741,1 pair: 0 0 -0.149,0.454 p_acc: 0.0596 p_fet: 1 +seg 706 708 single: NA NA NA,NA single: 4 0.25 0,0.657 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 708 710 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 738 740 single: NA NA NA,NA single: 5 0 0,0.393 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 749 751 single: NA NA NA,NA single: 8 0.25 0,0.55 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 753 755 single: NA NA NA,NA single: 12 0.167 0,0.41 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 820 822 single: 7 0.857 0.529,1 single: 20 0.4 0.2,0.6 pair: -0.457 -0.0729 -0.62,-0.0729 p_acc: 0.00528 p_fet: 0.0768 +seg 830 832 single: 7 0.857 0.529,1 single: 18 0.222 0.0252,0.419 pair: -0.635 -0.236 -0.766,-0.236 p_acc: 0.000768 p_fet: 0.0068 +seg 842 844 single: 4 0.75 0.343,1 single: 10 0.3 0.035,0.565 pair: -0.45 -0 -0.672,0.0536 p_acc: 0.0117 p_fet: 0.245 +seg 1149 1151 single: NA NA NA,NA single: 7 0 0,0.312 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1151 1153 single: NA NA NA,NA single: 10 0.1 0,0.364 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1172 1174 single: 3 1 0.473,1 single: 12 0.333 0.0889,0.578 pair: -0.667 -0.0658 -0.738,-0.0658 p_acc: 0.005 p_fet: 0.0769 +seg 1180 1182 single: 3 1 0.473,1 single: 11 0.0909 0,0.339 pair: -0.909 -0.286 -0.909,-0.286 p_acc: 0.000705 p_fet: 0.011 +seg 1201 1203 single: 3 0.667 0.249,1 single: 14 0.214 0,0.44 pair: -0.452 -0 -0.7,0.0401 p_acc: 0.0118 p_fet: 0.191 +seg 1203 1205 single: 3 0.667 0.249,1 single: 13 0.308 0.0724,0.543 pair: -0.359 -0 -0.629,0.133 p_acc: 0.0176 p_fet: 0.518 +seg 1303 1305 single: 3 1 0.473,1 single: 4 0 0,0.451 pair: -1 -0.229 -1,-0.229 p_acc: 0.00143 p_fet: 0.0286 +seg 1333 1335 single: 4 0.25 0,0.657 single: 6 0.167 0,0.521 pair: -0.0833 -0 -0.47,0.291 p_acc: 0.0339 p_fet: 1 +seg 1343 1345 single: 3 0 0,0.527 single: 10 0.2 0,0.47 pair: 0.2 0 -0.318,0.357 p_acc: 0.0363 p_fet: 1 +seg 1407 1409 single: NA NA NA,NA single: 4 0 0,0.451 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1409 1411 single: 4 0.75 0.343,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1412 1414 single: 3 1 0.473,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1422 1424 single: 5 0.6 0.264,0.936 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1428 1430 single: 5 0.6 0.264,0.936 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1445 1447 single: 6 0.833 0.479,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1448 1450 single: 6 0.833 0.479,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1453 1455 single: 6 0.833 0.479,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1488 1490 single: NA NA NA,NA single: 5 0.4 0.064,0.736 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1494 1496 single: NA NA NA,NA single: 5 0.4 0.064,0.736 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1510 1512 single: NA NA NA,NA single: 5 0.4 0.064,0.736 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1532 1534 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1538 1540 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1986 1988 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1993 1995 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 1997 1999 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2002 2004 single: 4 0.75 0.343,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2015 2017 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2019 2021 single: 4 0.75 0.343,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2028 2030 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2032 2034 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2035 2037 single: 3 1 0.473,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2040 2042 single: 4 0.75 0.343,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2310 2312 single: 8 1 0.717,1 single: 11 0.455 0.198,0.711 pair: -0.545 -0.162 -0.69,-0.162 p_acc: 0.00184 p_fet: 0.0181 +seg 2336 2338 single: 8 1 0.717,1 single: 5 0.6 0.264,0.936 pair: -0.4 -0.0115 -0.656,-0.0115 p_acc: 0.0099 p_fet: 0.128 +seg 2396 2398 single: 8 1 0.717,1 single: 12 0.333 0.0889,0.578 pair: -0.667 -0.273 -0.774,-0.273 p_acc: 0.000439 p_fet: 0.0047 +seg 2413 2415 single: NA NA NA,NA single: 4 0 0,0.451 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2425 2427 single: NA NA NA,NA single: 5 0 0,0.393 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2448 2450 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2481 2483 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2488 2490 single: 3 0.333 0,0.751 single: 7 0 0,0.312 pair: -0.333 -0 -0.669,0.0603 p_acc: 0.0175 p_fet: 0.3 +seg 2516 2518 single: 7 0.571 0.27,0.872 single: 16 0.5 0.278,0.722 pair: -0.0714 -0 -0.372,0.269 p_acc: 0.0377 p_fet: 1 +seg 2529 2531 single: 7 0.571 0.27,0.872 single: 25 0.04 0,0.17 pair: -0.531 -0.203 -0.745,-0.203 p_acc: 0.000552 p_fet: 0.00445 +seg 2548 2550 single: 10 0.7 0.435,0.965 single: 17 0.0588 0,0.238 pair: -0.641 -0.303 -0.787,-0.303 p_acc: 0.000131 p_fet: 0.000939 +seg 2550 2552 single: 10 0.8 0.53,1 single: 20 0.4 0.2,0.6 pair: -0.4 -0.0665 -0.586,-0.0665 p_acc: 0.00582 p_fet: 0.0577 +seg 2556 2558 single: 11 0.636 0.382,0.891 single: 19 0.0526 0,0.216 pair: -0.584 -0.271 -0.746,-0.271 p_acc: 0.000167 p_fet: 0.0011 +seg 2567 2569 single: 9 0.889 0.606,1 single: 11 0.364 0.109,0.618 pair: -0.525 -0.135 -0.697,-0.135 p_acc: 0.0027 p_fet: 0.0281 +seg 2573 2575 single: 10 0.9 0.636,1 single: 12 0.167 0,0.41 pair: -0.733 -0.352 -0.835,-0.352 p_acc: 0.000117 p_fet: 0.00191 +seg 2578 2580 single: 9 0.889 0.606,1 single: 10 0.5 0.234,0.766 pair: -0.389 -0.0151 -0.6,-0.0151 p_acc: 0.0092 p_fet: 0.141 +seg 2580 2582 single: 11 0.909 0.661,1 single: 9 0.222 0,0.507 pair: -0.687 -0.287 -0.812,-0.287 p_acc: 0.00036 p_fet: 0.00452 +seg 2603 2605 single: 8 1 0.717,1 single: 3 0.333 0,0.751 pair: -0.667 -0.119 -0.834,-0.119 p_acc: 0.00328 p_fet: 0.0545 +seg 2625 2627 single: 8 1 0.717,1 single: 5 0.6 0.264,0.936 pair: -0.4 -0.0115 -0.656,-0.0115 p_acc: 0.0099 p_fet: 0.128 +seg 2641 2643 single: 10 0.9 0.636,1 single: 10 0.2 0,0.47 pair: -0.7 -0.299 -0.817,-0.299 p_acc: 0.00031 p_fet: 0.00548 +seg 2645 2647 single: 9 0.667 0.391,0.942 single: 8 0.25 0,0.55 pair: -0.417 -0 -0.642,0.00262 p_acc: 0.00968 p_fet: 0.153 +seg 2659 2661 single: 11 0.727 0.473,0.982 single: 7 0.429 0.128,0.73 pair: -0.299 -0 -0.567,0.0906 p_acc: 0.0183 p_fet: 0.332 +seg 2684 2686 single: 9 0.778 0.493,1 single: 10 0.5 0.234,0.766 pair: -0.278 -0 -0.529,0.0939 p_acc: 0.0198 p_fet: 0.35 +seg 2741 2743 single: NA NA NA,NA single: 13 0.308 0.0724,0.543 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2781 2783 single: NA NA NA,NA single: 10 0.2 0,0.47 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 2976 2978 single: 92 0.88 0.811,0.95 single: 49 0.347 0.217,0.477 pair: -0.533 -0.393 -0.639,-0.393 p_acc: 7.62e-11 p_fet: 2.14e-10 +seg 2986 2988 single: 122 0.869 0.807,0.93 single: 61 0.377 0.258,0.496 pair: -0.492 -0.368 -0.592,-0.368 p_acc: 1.41e-11 p_fet: 1.77e-11 +seg 3042 3044 single: 5 1 0.607,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3063 3065 single: 8 0.75 0.45,1 single: 6 0 0,0.348 pair: -0.75 -0.257 -0.833,-0.257 p_acc: 0.000785 p_fet: 0.00966 +seg 3072 3074 single: 3 0.667 0.249,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3207 3209 single: 3 1 0.473,1 single: 6 0.833 0.479,1 pair: -0.167 -0 -0.397,0.333 p_acc: 0.0373 p_fet: 1 +seg 3359 3361 single: NA NA NA,NA single: 9 0.333 0.0575,0.609 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 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+seg 3754 3756 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3799 3801 single: NA NA NA,NA single: 3 0.333 0,0.751 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3801 3803 single: NA NA NA,NA single: 3 0.333 0,0.751 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3805 3807 single: NA NA NA,NA single: 3 0.333 0,0.751 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3809 3811 single: NA NA NA,NA single: 5 0.2 0,0.582 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3811 3813 single: NA NA NA,NA single: 4 0.25 0,0.657 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3814 3816 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3824 3826 single: NA NA NA,NA single: 4 0 0,0.451 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3839 3841 single: NA NA NA,NA single: 4 0 0,0.451 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3843 3845 single: NA NA NA,NA single: 5 0.2 0,0.582 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3849 3851 single: NA NA NA,NA single: 4 0.25 0,0.657 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3851 3853 single: NA NA NA,NA single: 5 0.2 0,0.582 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3861 3863 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3865 3867 single: NA NA NA,NA single: 4 0 0,0.451 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3867 3869 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 3882 3884 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 4025 4027 single: NA NA NA,NA single: 8 0.125 0,0.429 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 4037 4039 single: 3 1 0.473,1 single: 8 0.625 0.337,0.913 pair: -0.375 -0 -0.539,0.191 p_acc: 0.0204 p_fet: 0.491 +seg 4046 4048 single: 3 1 0.473,1 single: 7 0.143 0,0.471 pair: -0.857 -0.189 -0.87,-0.189 p_acc: 0.00194 p_fet: 0.0333 +seg 4057 4059 single: 4 1 0.549,1 single: 7 0.429 0.128,0.73 pair: -0.571 -0.0173 -0.71,-0.0173 p_acc: 0.00708 p_fet: 0.194 +seg 4060 4062 single: 4 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p_fet: 2.08e-05 +seg 4648 4650 single: 15 0.667 0.445,0.889 single: 39 0.179 0.0544,0.305 pair: -0.487 -0.232 -0.653,-0.232 p_acc: 0.00023 p_fet: 0.00108 +seg 4738 4740 single: 26 0.577 0.398,0.756 single: 53 0.151 0.0496,0.252 pair: -0.426 -0.232 -0.576,-0.232 p_acc: 5.23e-05 p_fet: 0.000172 +seg 4797 4799 single: 15 0.6 0.374,0.826 single: 45 0.0889 0,0.188 pair: -0.511 -0.271 -0.68,-0.271 p_acc: 3.55e-05 p_fet: 0.000153 +seg 4829 4831 single: 12 0.75 0.505,0.995 single: 38 0.105 0,0.22 pair: -0.645 -0.364 -0.782,-0.364 p_acc: 9.24e-06 p_fet: 4.74e-05 +seg 4846 4848 single: 14 0.929 0.721,1 single: 38 0.105 0,0.22 pair: -0.823 -0.574 -0.884,-0.574 p_acc: 1.06e-08 p_fet: 4.75e-08 +seg 4922 4924 single: 13 0.538 0.298,0.779 single: 33 0.273 0.123,0.422 pair: -0.266 -0.00424 -0.484,-0.00424 p_acc: 0.0135 p_fet: 0.167 +seg 4925 4927 single: 13 0.615 0.377,0.854 single: 33 0.303 0.15,0.456 pair: -0.312 -0.0403 -0.517,-0.0403 p_acc: 0.00858 p_fet: 0.0916 +seg 4932 4934 single: 15 0.8 0.583,1 single: 29 0.276 0.116,0.435 pair: -0.524 -0.251 -0.671,-0.251 p_acc: 0.000238 p_fet: 0.00138 +seg 4949 4951 single: 16 0.625 0.407,0.843 single: 23 0.13 0,0.292 pair: -0.495 -0.224 -0.661,-0.224 p_acc: 0.000359 p_fet: 0.00203 +seg 4982 4984 single: 15 0.6 0.374,0.826 single: 11 0.455 0.198,0.711 pair: -0.145 -0 -0.414,0.169 p_acc: 0.034 p_fet: 0.692 +seg 4984 4986 single: 14 0.571 0.338,0.804 single: 11 0.455 0.198,0.711 pair: -0.117 -0 -0.393,0.198 p_acc: 0.0369 p_fet: 0.695 +seg 5011 5013 single: 16 0.375 0.157,0.593 single: 12 0.25 0.00535,0.495 pair: -0.125 -0 -0.364,0.168 p_acc: 0.0389 p_fet: 0.687 +seg 5013 5015 single: 16 0.375 0.157,0.593 single: 11 0.455 0.198,0.711 pair: 0.0795 0 -0.215,0.359 p_acc: 0.0413 p_fet: 0.71 +seg 5049 5051 single: 6 0.333 0.0079,0.659 single: 8 0.125 0,0.429 pair: -0.208 -0 -0.509,0.156 p_acc: 0.0277 p_fet: 0.538 +seg 5057 5059 single: 4 0.75 0.343,1 single: 7 0 0,0.312 pair: -0.75 -0.191 -0.856,-0.191 p_acc: 0.00162 p_fet: 0.0242 +seg 5068 5070 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 5070 5072 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 5128 5130 single: 3 1 0.473,1 single: 9 0 0,0.259 pair: -1 -0.356 -1,-0.356 p_acc: 0.00028 p_fet: 0.00455 +seg 5160 5162 single: 4 1 0.549,1 single: 11 0 0,0.221 pair: -1 -0.45 -1,-0.45 p_acc: 5.52e-05 p_fet: 0.000733 +seg 5162 5164 single: 4 1 0.549,1 single: 7 0.143 0,0.471 pair: -0.857 -0.255 -0.88,-0.255 p_acc: 0.00101 p_fet: 0.0152 +seg 5182 5184 single: 3 1 0.473,1 single: 5 0 0,0.393 pair: -1 -0.271 -1,-0.271 p_acc: 0.000954 p_fet: 0.0179 +seg 5192 5194 single: 3 1 0.473,1 single: 6 0.167 0,0.521 pair: -0.833 -0.149 -0.858,-0.149 p_acc: 0.00267 p_fet: 0.0476 +seg 5201 5203 single: NA NA NA,NA single: 6 0 0,0.348 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 5333 5335 single: 14 0.857 0.637,1 single: 21 0.143 0,0.316 pair: -0.714 -0.42 -0.819,-0.42 p_acc: 6.9e-06 p_fet: 5.49e-05 +seg 5385 5387 single: 9 0.778 0.493,1 single: 14 0.357 0.127,0.587 pair: -0.421 -0.0503 -0.623,-0.0503 p_acc: 0.00667 p_fet: 0.0894 +seg 5537 5539 single: 5 1 0.607,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 5587 5589 single: 8 1 0.717,1 single: 18 0.778 0.581,0.975 pair: -0.222 -0 -0.356,0.0752 p_acc: 0.026 p_fet: 0.277 +seg 5857 5859 single: 4 0.75 0.343,1 single: 5 0.2 0,0.582 pair: -0.55 -0 -0.745,0.0401 p_acc: 0.00953 p_fet: 0.206 +seg 5869 5871 single: 4 0.75 0.343,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 5886 5888 single: 3 0.667 0.249,1 single: 4 0.25 0,0.657 pair: -0.417 -0 -0.685,0.196 p_acc: 0.0171 p_fet: 0.486 +seg 5896 5898 single: 3 0.667 0.249,1 single: 4 1 0.549,1 pair: 0.333 0 -0.17,0.639 p_acc: 0.0214 p_fet: 0.429 +seg 6182 6184 single: 4 0.5 0.147,0.853 single: 14 0.571 0.338,0.804 pair: 0.0714 0 -0.307,0.43 p_acc: 0.0325 p_fet: 1 +seg 6293 6295 single: 4 1 0.549,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6304 6306 single: 6 0.5 0.184,0.816 single: 5 0 0,0.393 pair: -0.5 -0.00245 -0.684,-0.00245 p_acc: 0.00849 p_fet: 0.182 +seg 6332 6334 single: 8 0.75 0.45,1 single: 6 0.167 0,0.521 pair: -0.583 -0.096 -0.751,-0.096 p_acc: 0.00412 p_fet: 0.103 +seg 6403 6405 single: 7 0.857 0.529,1 single: 3 0 0,0.527 pair: -0.857 -0.189 -0.87,-0.189 p_acc: 0.00194 p_fet: 0.0333 +seg 6411 6413 single: 6 1 0.652,1 single: 4 0.75 0.343,1 pair: -0.25 -0 -0.567,0.123 p_acc: 0.0255 p_fet: 0.4 +seg 6420 6422 single: 4 1 0.549,1 single: 3 0.667 0.249,1 pair: -0.333 -0 -0.639,0.17 p_acc: 0.0214 p_fet: 0.429 +seg 6487 6489 single: NA NA NA,NA single: 5 0 0,0.393 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6499 6501 single: NA NA NA,NA single: 5 0 0,0.393 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6533 6535 single: 3 0.667 0.249,1 single: 14 0.0714 0,0.279 pair: -0.595 -0.101 -0.805,-0.101 p_acc: 0.00412 p_fet: 0.0632 +seg 6544 6546 single: 4 0.75 0.343,1 single: 15 0 0,0.171 pair: -0.75 -0.272 -0.881,-0.272 p_acc: 0.000332 p_fet: 0.00413 +seg 6578 6580 single: NA NA NA,NA single: 7 0 0,0.312 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6630 6632 single: 5 1 0.607,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6633 6635 single: 5 1 0.607,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6640 6642 single: 7 1 0.688,1 single: 3 0.667 0.249,1 pair: -0.333 -0 -0.669,0.0603 p_acc: 0.0175 p_fet: 0.3 +seg 6654 6656 single: 8 0.875 0.571,1 single: 4 0.25 0,0.657 pair: -0.625 -0.0857 -0.789,-0.0857 p_acc: 0.00448 p_fet: 0.0667 +seg 6671 6673 single: 9 0.778 0.493,1 single: 9 0.222 0,0.507 pair: -0.556 -0.135 -0.731,-0.135 p_acc: 0.00281 p_fet: 0.0567 +seg 6732 6734 single: 3 1 0.473,1 single: 9 0.111 0,0.394 pair: -0.889 -0.247 -0.889,-0.247 p_acc: 0.00112 p_fet: 0.0182 +seg 6774 6776 single: 6 0.833 0.479,1 single: 7 0 0,0.312 pair: -0.833 -0.318 -0.887,-0.318 p_acc: 0.000374 p_fet: 0.00466 +seg 6789 6791 single: 6 1 0.652,1 single: 5 0 0,0.393 pair: -1 -0.417 -1,-0.417 p_acc: 0.000152 p_fet: 0.00216 +seg 6794 6796 single: 9 1 0.741,1 single: 7 0 0,0.312 pair: -1 -0.549 -1,-0.549 p_acc: 8.26e-06 p_fet: 8.74e-05 +seg 6839 6841 single: 3 1 0.473,1 single: 4 0.25 0,0.657 pair: -0.75 -0.0327 -0.822,-0.0327 p_acc: 0.00572 p_fet: 0.143 +seg 6845 6847 single: 4 1 0.549,1 single: 5 0.2 0,0.582 pair: -0.8 -0.161 -0.854,-0.161 p_acc: 0.00238 p_fet: 0.0476 +seg 6855 6857 single: 4 1 0.549,1 single: 5 0.2 0,0.582 pair: -0.8 -0.161 -0.854,-0.161 p_acc: 0.00238 p_fet: 0.0476 +seg 6861 6863 single: 6 1 0.652,1 single: 4 0.25 0,0.657 pair: -0.75 -0.168 -0.85,-0.168 p_acc: 0.00212 p_fet: 0.0333 +seg 6901 6903 single: 6 0.833 0.479,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6909 6911 single: 6 1 0.652,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6927 6929 single: 6 1 0.652,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6940 6942 single: 3 1 0.473,1 single: 3 0 0,0.527 pair: -1 -0.17 -1,-0.17 p_acc: 0.00229 p_fet: 0.1 +seg 6942 6944 single: 4 1 0.549,1 single: 4 0 0,0.451 pair: -1 -0.291 -1,-0.291 p_acc: 0.000795 p_fet: 0.0286 +seg 6950 6952 single: 4 1 0.549,1 single: 4 0 0,0.451 pair: -1 -0.291 -1,-0.291 p_acc: 0.000795 p_fet: 0.0286 +seg 6954 6956 single: NA NA NA,NA single: 5 0 0,0.393 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 6983 6985 single: 3 1 0.473,1 single: 5 0 0,0.393 pair: -1 -0.271 -1,-0.271 p_acc: 0.000954 p_fet: 0.0179 +seg 7006 7008 single: 3 1 0.473,1 single: 4 0 0,0.451 pair: -1 -0.229 -1,-0.229 p_acc: 0.00143 p_fet: 0.0286 +seg 7188 7190 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 7204 7206 single: NA NA NA,NA single: 3 0 0,0.527 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 7546 7548 single: NA NA NA,NA single: 7 0.857 0.529,1 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 7805 7807 single: NA NA NA,NA single: 8 0.125 0,0.429 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 7987 7989 single: NA NA NA,NA single: 13 0 0,0.193 pair: NA NA NA,NA p_acc: NA p_fet: NA +seg 8052 8054 single: 4 1 0.549,1 single: 9 0.111 0,0.394 pair: -0.889 -0.315 -0.896,-0.315 p_acc: 0.0005 p_fet: 0.00699 +seg 8058 8060 single: 4 1 0.549,1 single: 6 0.333 0.0079,0.659 pair: -0.667 -0.0776 -0.778,-0.0776 p_acc: 0.00455 p_fet: 0.0762 +seg 8089 8091 single: 3 0.667 0.249,1 single: 3 0 0,0.527 pair: -0.667 -0 -0.791,0.054 p_acc: 0.00915 p_fet: 0.4 +seg 8094 8096 single: 3 1 0.473,1 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/PE_dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,3 @@ +seg 152 1305 - 20 15 5 1 +seg 2310 7008 - 95 77 18 1 +seg 8052 8091 - 3 3 0 1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/SE_comp.g1.vs.g2.txt Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,310 @@ +#chrom start end single: totalC_0 nominalRatio_0 ratioCI_0 single: totalC_1 nominalRatio_1 ratioCI_1 pair: nominalDif_1-0 credibleDif_1-0 difCI_1-0 p_sim: p_sim_1_v_0 p_fet: p_fet_1_v_0 +chr11 41 43 single: 3 0 0,0.527 single: 3 0 0,0.527 pair: 0 0 -0.391,0.391 p_acc: 0.0449 p_fet: 1 +chr11 48 50 single: 5 0 0,0.393 single: 3 0 0,0.527 pair: 0 0 -0.267,0.422 p_acc: 0.0521 p_fet: 1 +chr11 56 58 single: 6 0 0,0.348 single: 4 0 0,0.451 pair: 0 0 -0.241,0.359 p_acc: 0.0619 p_fet: 1 +chr11 59 61 single: 8 0 0,0.283 single: 5 0.4 0.064,0.736 pair: 0.4 0.0115 0.0115,0.656 p_acc: 0.0099 p_fet: 0.128 +chr11 101 103 single: 13 0.0769 0,0.297 single: 7 0.143 0,0.471 pair: 0.0659 0 -0.152,0.364 p_acc: 0.051 p_fet: 1 +chr11 140 142 single: 16 0 0,0.162 single: 9 0 0,0.259 pair: 0 0 -0.107,0.216 p_acc: 0.123 p_fet: 1 +chr11 144 146 single: 14 0 0,0.181 single: 10 0.1 0,0.364 pair: 0.1 0 -0.0722,0.317 p_acc: 0.0549 p_fet: 0.417 +chr11 210 212 single: 15 0.133 0,0.344 single: 12 0.417 0.169,0.664 pair: 0.283 0 -0.00696,0.507 p_acc: 0.0139 p_fet: 0.185 +chr11 215 217 single: 19 0.263 0.0688,0.458 single: 16 0.25 0.039,0.461 pair: -0.0132 -0 -0.238,0.226 p_acc: 0.0566 p_fet: 1 +chr11 316 318 single: 24 0.0833 0,0.231 single: 26 0.846 0.692,1 pair: 0.763 0.538 0.538,0.845 p_acc: 9.21e-09 p_fet: 3.52e-08 +chr11 331 333 single: 27 0.037 0,0.159 single: 26 0.808 0.649,0.966 pair: 0.771 0.558 0.558,0.85 p_acc: 1.11e-09 p_fet: 4.05e-09 +chr11 400 402 single: 34 0.0588 0,0.169 single: 34 0.412 0.254,0.57 pair: 0.353 0.18 0.18,0.486 p_acc: 0.000192 p_fet: 0.00115 +chr11 407 409 single: 33 0 0,0.0843 single: 34 0.588 0.43,0.746 pair: 0.588 0.41 0.41,0.692 p_acc: 8.72e-09 p_fet: 3.39e-08 +chr11 445 447 single: 25 0.08 0,0.223 single: 33 0.606 0.447,0.766 pair: 0.526 0.316 0.316,0.648 p_acc: 9.32e-06 p_fet: 3.59e-05 +chr11 469 471 single: 26 0.0385 0,0.164 single: 34 0.588 0.43,0.746 pair: 0.55 0.352 0.352,0.661 p_acc: 1.43e-06 p_fet: 5.87e-06 +chr11 546 548 single: 20 0.1 0,0.271 single: 32 0.812 0.672,0.953 pair: 0.713 0.482 0.482,0.806 p_acc: 1.08e-07 p_fet: 4.38e-07 +chr11 666 668 single: 20 0.05 0,0.207 single: 38 0.553 0.401,0.704 pair: 0.503 0.29 0.29,0.612 p_acc: 2.88e-05 p_fet: 0.000144 +chr11 694 696 single: 22 0.318 0.132,0.504 single: 41 0.902 0.795,1 pair: 0.584 0.368 0.368,0.716 p_acc: 8.72e-07 p_fet: 2.95e-06 +chr11 712 714 single: 28 0.0714 0,0.202 single: 42 0.881 0.771,0.991 pair: 0.81 0.63 0.63,0.873 p_acc: 1.66e-12 p_fet: 4.55e-12 +chr11 721 723 single: 28 0.0357 0,0.153 single: 39 0.923 0.817,1 pair: 0.887 0.719 0.719,0.926 p_acc: 9.44e-15 p_fet: 2.57e-14 +chr11 737 739 single: 27 0.037 0,0.159 single: 37 0.622 0.471,0.772 pair: 0.585 0.393 0.393,0.687 p_acc: 2.21e-07 p_fet: 9.15e-07 +chr11 753 755 single: 23 0.087 0,0.24 single: 41 0.78 0.653,0.908 pair: 0.694 0.488 0.488,0.783 p_acc: 1.74e-08 p_fet: 5.8e-08 +chr11 762 764 single: 27 0.037 0,0.159 single: 42 0.619 0.477,0.761 pair: 0.582 0.397 0.397,0.68 p_acc: 1.42e-07 p_fet: 5.56e-07 +chr11 792 794 single: 37 0.324 0.178,0.471 single: 38 0.842 0.719,0.966 pair: 0.518 0.329 0.329,0.642 p_acc: 1.8e-06 p_fet: 6.02e-06 +chr11 798 800 single: 36 0.306 0.159,0.452 single: 40 0.875 0.761,0.989 pair: 0.569 0.384 0.384,0.685 p_acc: 1.25e-07 p_fet: 3.94e-07 +chr11 816 818 single: 33 0.0303 0,0.132 single: 34 0.912 0.793,1 pair: 0.881 0.714 0.714,0.924 p_acc: 5.66e-15 p_fet: 1.61e-14 +chr11 830 832 single: 37 0.405 0.254,0.557 single: 35 0.914 0.798,1 pair: 0.509 0.324 0.324,0.629 p_acc: 1.55e-06 p_fet: 5.05e-06 +chr11 954 956 single: 47 0 0,0.0605 single: 33 0.485 0.323,0.647 pair: 0.485 0.324 0.324,0.606 p_acc: 1.85e-08 p_fet: 4.33e-08 +chr11 977 979 single: 47 0.255 0.132,0.379 single: 37 0.703 0.559,0.847 pair: 0.447 0.264 0.264,0.579 p_acc: 1.7e-05 p_fet: 5.98e-05 +chr11 1006 1008 single: 38 0 0,0.0739 single: 38 0.526 0.374,0.678 pair: 0.526 0.364 0.364,0.633 p_acc: 1.27e-08 p_fet: 6.16e-08 +chr11 1066 1068 single: 30 0.367 0.202,0.532 single: 45 0.756 0.63,0.881 pair: 0.389 0.192 0.192,0.538 p_acc: 0.00027 p_fet: 0.00152 +chr11 1116 1118 single: 22 0.182 0.0087,0.355 single: 35 0.771 0.632,0.911 pair: 0.59 0.362 0.362,0.713 p_acc: 4.09e-06 p_fet: 2.32e-05 +chr11 1145 1147 single: 18 0.556 0.345,0.766 single: 26 0.538 0.358,0.719 pair: -0.0171 -0 -0.248,0.222 p_acc: 0.0547 p_fet: 1 +chr11 1260 1262 single: 18 0.0556 0,0.226 single: 24 0.375 0.192,0.558 pair: 0.319 0.0943 0.0943,0.47 p_acc: 0.00355 p_fet: 0.0264 +chr11 1320 1322 single: 17 0.118 0,0.31 single: 25 0.64 0.461,0.819 pair: 0.522 0.26 0.26,0.661 p_acc: 0.000172 p_fet: 0.00122 +chr11 1559 1561 single: 36 0.194 0.0615,0.327 single: 27 0.852 0.702,1 pair: 0.657 0.451 0.451,0.762 p_acc: 5.66e-08 p_fet: 1.9e-07 +chr11 1574 1576 single: 33 0.152 0.0184,0.285 single: 28 0.607 0.435,0.779 pair: 0.456 0.245 0.245,0.601 p_acc: 7.43e-05 p_fet: 0.000388 +chr11 1592 1594 single: 35 0.343 0.191,0.495 single: 33 0.697 0.544,0.85 pair: 0.354 0.149 0.149,0.509 p_acc: 0.001 p_fet: 0.00421 +chr11 1609 1611 single: 34 0.0588 0,0.169 single: 41 0.244 0.113,0.375 pair: 0.185 0.0419 0.0419,0.305 p_acc: 0.0094 p_fet: 0.0545 +chr11 1632 1634 single: 36 0.0556 0,0.161 single: 45 0.2 0.0811,0.319 pair: 0.144 0.0144 0.0144,0.255 p_acc: 0.0193 p_fet: 0.1 +chr11 1642 1644 single: 32 0.188 0.0468,0.328 single: 41 0.268 0.134,0.402 pair: 0.0808 0 -0.0869,0.229 p_acc: 0.0606 p_fet: 0.578 +chr11 1680 1682 single: 34 0.0882 0,0.207 single: 54 0.611 0.485,0.738 pair: 0.523 0.354 0.354,0.626 p_acc: 2.25e-07 p_fet: 6.09e-07 +chr11 1689 1691 single: 35 0.2 0.0642,0.336 single: 51 0.471 0.338,0.603 pair: 0.271 0.095 0.095,0.408 p_acc: 0.00289 p_fet: 0.0124 +chr11 1703 1705 single: 42 0.262 0.13,0.393 single: 49 0.755 0.635,0.875 pair: 0.493 0.319 0.319,0.614 p_acc: 1.06e-06 p_fet: 2.93e-06 +chr11 1733 1735 single: 43 0.512 0.368,0.655 single: 51 0.745 0.626,0.864 pair: 0.233 0.0666 0.0666,0.379 p_acc: 0.00549 p_fet: 0.0305 +chr11 1766 1768 single: 46 0.13 0.0243,0.237 single: 48 0.312 0.184,0.441 pair: 0.182 0.0381 0.0381,0.31 p_acc: 0.0105 p_fet: 0.0473 +chr11 1869 1871 single: 45 0.244 0.119,0.37 single: 38 0.263 0.125,0.402 pair: 0.0187 0 -0.134,0.175 p_acc: 0.0834 p_fet: 1 +chr11 2040 2042 single: 37 0 0,0.0758 single: 34 0 0,0.082 pair: 0 0 -0.057,0.0639 p_acc: 0.31 p_fet: 1 +chr11 2104 2106 single: 37 0.027 0,0.119 single: 39 0.0513 0,0.149 pair: 0.0243 0 -0.0641,0.111 p_acc: 0.153 p_fet: 1 +chr11 2148 2150 single: 31 0.613 0.449,0.777 single: 34 0.588 0.43,0.746 pair: -0.0247 -0 -0.214,0.17 p_acc: 0.0664 p_fet: 1 +chr11 2360 2362 single: 42 0.262 0.13,0.393 single: 26 0.538 0.358,0.719 pair: 0.277 0.0726 0.0726,0.448 p_acc: 0.00528 p_fet: 0.0373 +chr11 2384 2386 single: 34 0.382 0.226,0.539 single: 27 0.593 0.417,0.768 pair: 0.21 0 -0.00431,0.392 p_acc: 0.0176 p_fet: 0.126 +chr11 2454 2456 single: 41 0.171 0.0504,0.291 single: 28 0.107 0,0.246 pair: -0.0636 -0 -0.189,0.0894 p_acc: 0.0753 p_fet: 0.729 +chr11 2621 2623 single: 9 0 0,0.259 single: 12 0 0,0.206 pair: 0 0 -0.206,0.147 p_acc: 0.112 p_fet: 1 +chr11 2648 2650 single: 10 0 0,0.238 single: 20 0 0,0.133 pair: 0 0 -0.202,0.0851 p_acc: 0.138 p_fet: 1 +chr11 2665 2667 single: 13 0 0,0.193 single: 19 0.105 0,0.283 pair: 0.105 0 -0.0832,0.237 p_acc: 0.0587 p_fet: 0.502 +chr11 2667 2669 single: 17 0 0,0.153 single: 20 0.1 0,0.271 pair: 0.1 0 -0.0533,0.233 p_acc: 0.057 p_fet: 0.489 +chr11 2673 2675 single: 13 0 0,0.193 single: 21 0.19 0.0119,0.369 pair: 0.19 0 -0.0203,0.323 p_acc: 0.0228 p_fet: 0.144 +chr11 2676 2678 single: 17 0 0,0.153 single: 26 0.0385 0,0.164 pair: 0.0385 0 -0.0986,0.129 p_acc: 0.132 p_fet: 1 +chr11 2685 2687 single: 16 0.0625 0,0.25 single: 28 0.143 0,0.288 pair: 0.0804 0 -0.113,0.211 p_acc: 0.0661 p_fet: 0.638 +chr11 2688 2690 single: 19 0 0,0.139 single: 28 0 0,0.0981 pair: 0 0 -0.114,0.0684 p_acc: 0.215 p_fet: 1 +chr11 2691 2693 single: 20 0 0,0.133 single: 29 0.276 0.116,0.435 pair: 0.276 0.0981 0.0981,0.397 p_acc: 0.00242 p_fet: 0.0148 +chr11 2713 2715 single: 22 0 0,0.122 single: 26 0.154 6.6e-05,0.308 pair: 0.154 0.0107 0.0107,0.277 p_acc: 0.0197 p_fet: 0.114 +chr11 2723 2725 single: 19 0 0,0.139 single: 25 0.12 0,0.272 pair: 0.12 0 -0.0272,0.238 p_acc: 0.0404 p_fet: 0.247 +chr11 2727 2729 single: 20 0 0,0.133 single: 20 0.35 0.153,0.547 pair: 0.35 0.143 0.143,0.501 p_acc: 0.000903 p_fet: 0.00832 +chr11 2731 2733 single: 17 0.0588 0,0.238 single: 19 0.211 0.02,0.401 pair: 0.152 0 -0.0525,0.322 p_acc: 0.0341 p_fet: 0.342 +chr11 2738 2740 single: 18 0 0,0.146 single: 22 0.273 0.0909,0.455 pair: 0.273 0.0783 0.0783,0.414 p_acc: 0.00417 p_fet: 0.0243 +chr11 2767 2769 single: 15 0 0,0.171 single: 21 0.333 0.142,0.525 pair: 0.333 0.107 0.107,0.473 p_acc: 0.00267 p_fet: 0.0273 +chr11 2778 2780 single: 12 0.0833 0,0.316 single: 22 0.455 0.261,0.648 pair: 0.371 0.0842 0.0842,0.526 p_acc: 0.00465 p_fet: 0.0527 +chr11 2788 2790 single: 8 0 0,0.283 single: 18 0.167 0,0.359 pair: 0.167 0 -0.118,0.297 p_acc: 0.0398 p_fet: 0.529 +chr11 2792 2794 single: 7 0.143 0,0.471 single: 22 0.318 0.132,0.504 pair: 0.175 0 -0.175,0.358 p_acc: 0.0341 p_fet: 0.635 +chr11 2810 2812 single: 3 0 0,0.527 single: 19 0.105 0,0.283 pair: 0.105 0 -0.4,0.187 p_acc: 0.0515 p_fet: 1 +chr11 2825 2827 single: 4 0 0,0.451 single: 15 0.133 0,0.344 pair: 0.133 0 -0.3,0.253 p_acc: 0.0491 p_fet: 1 +chr11 3031 3033 single: 13 0.0769 0,0.297 single: 15 0.4 0.174,0.626 pair: 0.323 0.038 0.038,0.511 p_acc: 0.00851 p_fet: 0.0836 +chr11 3034 3036 single: 13 0 0,0.193 single: 14 0.286 0.059,0.512 pair: 0.286 0.0412 0.0412,0.462 p_acc: 0.00859 p_fet: 0.0978 +chr11 3052 3054 single: 15 0.0667 0,0.264 single: 13 0.769 0.534,1 pair: 0.703 0.377 0.377,0.816 p_acc: 3.11e-05 p_fet: 0.000267 +chr11 3095 3097 single: 11 0.273 0.0181,0.527 single: 10 0.8 0.53,1 pair: 0.527 0.141 0.141,0.706 p_acc: 0.00253 p_fet: 0.03 +chr11 3117 3119 single: 12 0.0833 0,0.316 single: 14 0.571 0.338,0.804 pair: 0.488 0.161 0.161,0.655 p_acc: 0.00167 p_fet: 0.0145 +chr11 3273 3275 single: 38 0.105 0,0.22 single: 25 0.48 0.296,0.664 pair: 0.375 0.178 0.178,0.532 p_acc: 0.000337 p_fet: 0.00124 +chr11 3283 3285 single: 37 0.027 0,0.119 single: 23 0.478 0.288,0.669 pair: 0.451 0.257 0.257,0.6 p_acc: 1.1e-05 p_fet: 3.67e-05 +chr11 3323 3325 single: 35 0.0571 0,0.165 single: 24 0.625 0.442,0.808 pair: 0.568 0.358 0.358,0.698 p_acc: 8.63e-07 p_fet: 2.9e-06 +chr11 3424 3426 single: 30 0.0667 0,0.189 single: 21 0.0952 0,0.259 pair: 0.0286 0 -0.0969,0.184 p_acc: 0.0956 p_fet: 1 +chr11 3452 3454 single: 27 0 0,0.101 single: 17 0.588 0.374,0.803 pair: 0.588 0.349 0.349,0.729 p_acc: 1.79e-06 p_fet: 7.84e-06 +chr11 3484 3486 single: 25 0.04 0,0.17 single: 18 0.556 0.345,0.766 pair: 0.516 0.275 0.275,0.667 p_acc: 4.33e-05 p_fet: 0.000196 +chr11 3578 3580 single: 19 0.263 0.0688,0.458 single: 19 0.737 0.542,0.931 pair: 0.474 0.194 0.194,0.641 p_acc: 0.000789 p_fet: 0.00856 +chr11 3595 3597 single: 20 0 0,0.133 single: 21 0.238 0.0554,0.421 pair: 0.238 0.0598 0.0598,0.385 p_acc: 0.00603 p_fet: 0.0478 +chr11 3611 3613 single: 19 0.0526 0,0.216 single: 23 0.826 0.658,0.994 pair: 0.773 0.525 0.525,0.852 p_acc: 7.44e-08 p_fet: 3.4e-07 +chr11 3617 3619 single: 19 0 0,0.139 single: 21 0.762 0.579,0.945 pair: 0.762 0.514 0.514,0.842 p_acc: 7.07e-08 p_fet: 3.39e-07 +chr11 3639 3641 single: 16 0.125 0,0.326 single: 20 0.6 0.4,0.8 pair: 0.475 0.194 0.194,0.633 p_acc: 0.000772 p_fet: 0.00572 +chr11 3646 3648 single: 17 0.0588 0,0.238 single: 23 0.391 0.204,0.579 pair: 0.332 0.0973 0.0973,0.485 p_acc: 0.00347 p_fet: 0.0257 +chr11 3665 3667 single: 13 0.0769 0,0.297 single: 21 0.571 0.375,0.768 pair: 0.495 0.203 0.203,0.637 p_acc: 0.000728 p_fet: 0.00476 +chr11 3672 3674 single: 13 0 0,0.193 single: 23 0.348 0.163,0.532 pair: 0.348 0.106 0.106,0.476 p_acc: 0.00296 p_fet: 0.0319 +chr11 3677 3679 single: 14 0 0,0.181 single: 23 0.261 0.0841,0.438 pair: 0.261 0.0448 0.0448,0.391 p_acc: 0.00827 p_fet: 0.0645 +chr11 3693 3695 single: 17 0 0,0.153 single: 26 0.231 0.0678,0.394 pair: 0.231 0.0451 0.0451,0.355 p_acc: 0.0084 p_fet: 0.0662 +chr11 3704 3706 single: 20 0 0,0.133 single: 25 0.2 0.0371,0.363 pair: 0.2 0.0359 0.0359,0.329 p_acc: 0.0104 p_fet: 0.0562 +chr11 3707 3709 single: 21 0 0,0.127 single: 25 0.16 0.00176,0.318 pair: 0.16 0.0108 0.0108,0.286 p_acc: 0.019 p_fet: 0.114 +chr11 3717 3719 single: 22 0.0455 0,0.19 single: 21 0.286 0.0986,0.473 pair: 0.24 0.0455 0.0455,0.403 p_acc: 0.00857 p_fet: 0.0459 +chr11 3960 3962 single: 21 0 0,0.127 single: 18 0.167 0,0.359 pair: 0.167 0.011 0.011,0.326 p_acc: 0.0188 p_fet: 0.0893 +chr11 3991 3993 single: 20 0 0,0.133 single: 24 0.167 0.00373,0.33 pair: 0.167 0.0109 0.0109,0.296 p_acc: 0.0184 p_fet: 0.114 +chr11 4056 4058 single: 22 0 0,0.122 single: 24 0.292 0.115,0.468 pair: 0.292 0.111 0.111,0.431 p_acc: 0.0016 p_fet: 0.00965 +chr11 4163 4165 single: 26 0.0769 0,0.215 single: 30 0.0333 0,0.144 pair: -0.0436 -0 -0.167,0.067 p_acc: 0.103 p_fet: 0.592 +chr11 4195 4197 single: 23 0.0435 0,0.183 single: 26 0.231 0.0678,0.394 pair: 0.187 0.0142 0.0142,0.331 p_acc: 0.0161 p_fet: 0.103 +chr11 4202 4204 single: 21 0 0,0.127 single: 30 0.0667 0,0.189 pair: 0.0667 0 -0.056,0.159 p_acc: 0.09 p_fet: 0.506 +chr11 4207 4209 single: 18 0.0556 0,0.226 single: 31 0.194 0.0495,0.338 pair: 0.138 0 -0.0495,0.266 p_acc: 0.0376 p_fet: 0.238 +chr11 4243 4245 single: 30 0.133 0,0.271 single: 27 0.111 0,0.254 pair: -0.0222 -0 -0.164,0.129 p_acc: 0.0905 p_fet: 1 +chr11 4248 4250 single: 32 0.0312 0,0.136 single: 31 0.0323 0,0.14 pair: 0.00101 0 -0.0916,0.0963 p_acc: 0.165 p_fet: 1 +chr11 4284 4286 single: 34 0.0882 0,0.207 single: 31 0.226 0.0775,0.374 pair: 0.138 0 -0.014,0.281 p_acc: 0.0299 p_fet: 0.174 +chr11 4289 4291 single: 33 0 0,0.0843 single: 27 0.0741 0,0.208 pair: 0.0741 0 -0.0153,0.186 p_acc: 0.0629 p_fet: 0.198 +chr11 4302 4304 single: 34 0 0,0.082 single: 30 0 0,0.0921 pair: 0 0 -0.0611,0.0723 p_acc: 0.285 p_fet: 1 +chr11 4307 4309 single: 31 0 0,0.0894 single: 34 0.0294 0,0.129 pair: 0.0294 0 -0.0497,0.107 p_acc: 0.175 p_fet: 1 +chr11 4314 4316 single: 27 0 0,0.101 single: 33 0.0606 0,0.174 pair: 0.0606 0 -0.0384,0.149 p_acc: 0.094 p_fet: 0.497 +chr11 4320 4322 single: 25 0.04 0,0.17 single: 34 0.0882 0,0.207 pair: 0.0482 0 -0.082,0.153 p_acc: 0.0995 p_fet: 0.63 +chr11 4330 4332 single: 23 0 0,0.117 single: 36 0.0278 0,0.122 pair: 0.0278 0 -0.0768,0.0958 p_acc: 0.177 p_fet: 1 +chr11 4340 4342 single: 22 0.0455 0,0.19 single: 31 0.0323 0,0.14 pair: -0.0132 -0 -0.143,0.0832 p_acc: 0.134 p_fet: 1 +chr11 4365 4367 single: 20 0 0,0.133 single: 33 0.0303 0,0.132 pair: 0.0303 0 -0.0885,0.103 p_acc: 0.162 p_fet: 1 +chr11 4393 4395 single: 18 0 0,0.146 single: 28 0.143 0,0.288 pair: 0.143 0 -0.0153,0.253 p_acc: 0.0296 p_fet: 0.144 +chr11 4403 4405 single: 16 0 0,0.162 single: 25 0 0,0.109 pair: 0 0 -0.133,0.0747 p_acc: 0.19 p_fet: 1 +chr11 4405 4407 single: 17 0 0,0.153 single: 24 0 0,0.113 pair: 0 0 -0.125,0.0796 p_acc: 0.193 p_fet: 1 +chr11 4420 4422 single: 14 0.0714 0,0.279 single: 22 0.136 0,0.304 pair: 0.0649 0 -0.145,0.216 p_acc: 0.0682 p_fet: 1 +chr11 4456 4458 single: 14 0 0,0.181 single: 15 0 0,0.171 pair: 0 0 -0.14,0.128 p_acc: 0.149 p_fet: 1 +chr11 4458 4460 single: 14 0 0,0.181 single: 16 0.0625 0,0.25 pair: 0.0625 0 -0.101,0.206 p_acc: 0.0874 p_fet: 1 +chr11 4469 4471 single: 14 0.0714 0,0.279 single: 13 0.154 0,0.385 pair: 0.0824 0 -0.132,0.291 p_acc: 0.0559 p_fet: 0.596 +chr11 4482 4484 single: 15 0.0667 0,0.264 single: 19 0 0,0.139 pair: -0.0667 -0 -0.228,0.0612 p_acc: 0.0804 p_fet: 0.441 +chr11 4499 4501 single: 16 0.0625 0,0.25 single: 24 0.0417 0,0.176 pair: -0.0208 -0 -0.189,0.102 p_acc: 0.101 p_fet: 1 +chr11 4519 4521 single: 19 0.105 0,0.283 single: 23 0.304 0.123,0.485 pair: 0.199 0 -0.019,0.37 p_acc: 0.021 p_fet: 0.149 +chr11 4523 4525 single: 20 0.05 0,0.207 single: 25 0.28 0.108,0.452 pair: 0.23 0.0331 0.0331,0.378 p_acc: 0.0106 p_fet: 0.0592 +chr11 4532 4534 single: 20 0 0,0.133 single: 23 0.174 0.00602,0.342 pair: 0.174 0.0155 0.0155,0.308 p_acc: 0.0166 p_fet: 0.111 +chr11 4549 4551 single: 21 0.0476 0,0.198 single: 26 0.231 0.0678,0.394 pair: 0.183 0.00182 0.00182,0.327 p_acc: 0.0191 p_fet: 0.112 +chr11 4558 4560 single: 21 0 0,0.127 single: 25 0.2 0.0371,0.363 pair: 0.2 0.0399 0.0399,0.33 p_acc: 0.00952 p_fet: 0.0536 +chr11 4588 4590 single: 21 0.0476 0,0.198 single: 15 0 0,0.171 pair: -0.0476 -0 -0.159,0.105 p_acc: 0.11 p_fet: 1 +chr11 4594 4596 single: 20 0 0,0.133 single: 18 0.0556 0,0.226 pair: 0.0556 0 -0.0646,0.193 p_acc: 0.0964 p_fet: 0.474 +chr11 4633 4635 single: 15 0.0667 0,0.264 single: 19 0.263 0.0688,0.458 pair: 0.196 0 -0.0347,0.369 p_acc: 0.0237 p_fet: 0.196 +chr11 4692 4694 single: 15 0.0667 0,0.264 single: 16 0.188 0,0.396 pair: 0.121 0 -0.0941,0.308 p_acc: 0.0454 p_fet: 0.6 +chr11 4723 4725 single: 16 0 0,0.162 single: 17 0.235 0.0315,0.439 pair: 0.235 0.0328 0.0328,0.398 p_acc: 0.0105 p_fet: 0.103 +chr11 4744 4746 single: 15 0.0667 0,0.264 single: 21 0.0952 0,0.259 pair: 0.0286 0 -0.161,0.177 p_acc: 0.0837 p_fet: 1 +chr11 4756 4758 single: 19 0 0,0.139 single: 24 0.208 0.0409,0.376 pair: 0.208 0.0368 0.0368,0.34 p_acc: 0.0101 p_fet: 0.0562 +chr11 4785 4787 single: 19 0.0526 0,0.216 single: 22 0.182 0.0087,0.355 pair: 0.129 0 -0.0537,0.284 p_acc: 0.0407 p_fet: 0.35 +chr11 4789 4791 single: 21 0.0476 0,0.198 single: 24 0.0833 0,0.231 pair: 0.0357 0 -0.11,0.167 p_acc: 0.0974 p_fet: 1 +chr11 4791 4793 single: 21 0.19 0.0119,0.369 single: 23 0.261 0.0841,0.438 pair: 0.0704 0 -0.139,0.262 p_acc: 0.0571 p_fet: 0.724 +chr11 4799 4801 single: 24 0.0833 0,0.231 single: 25 0 0,0.109 pair: -0.0833 -0 -0.203,0.0283 p_acc: 0.0616 p_fet: 0.235 +chr11 4845 4847 single: 24 0.0417 0,0.176 single: 23 0 0,0.117 pair: -0.0417 -0 -0.147,0.063 p_acc: 0.127 p_fet: 1 +chr11 4860 4862 single: 24 0 0,0.113 single: 17 0 0,0.153 pair: 0 0 -0.0796,0.125 p_acc: 0.193 p_fet: 1 +chr11 4869 4871 single: 24 0 0,0.113 single: 21 0.238 0.0554,0.421 pair: 0.238 0.0726 0.0726,0.39 p_acc: 0.00403 p_fet: 0.0167 +chr11 4872 4874 single: 26 0 0,0.105 single: 20 0.1 0,0.271 pair: 0.1 0 -0.0148,0.243 p_acc: 0.0448 p_fet: 0.184 +chr11 4894 4896 single: 25 0 0,0.109 single: 24 0.0833 0,0.231 pair: 0.0833 0 -0.0283,0.203 p_acc: 0.0616 p_fet: 0.235 +chr11 4908 4910 single: 26 0.0385 0,0.164 single: 27 0.0741 0,0.208 pair: 0.0356 0 -0.0867,0.155 p_acc: 0.109 p_fet: 1 +chr11 4923 4925 single: 26 0 0,0.105 single: 28 0 0,0.0981 pair: 0 0 -0.0815,0.0739 p_acc: 0.249 p_fet: 1 +chr11 4942 4944 single: 25 0 0,0.109 single: 22 0.136 0,0.304 pair: 0.136 0.00635 0.00635,0.275 p_acc: 0.0239 p_fet: 0.095 +chr11 5009 5011 single: 21 0.0476 0,0.198 single: 25 0.08 0,0.223 pair: 0.0324 0 -0.113,0.16 p_acc: 0.101 p_fet: 1 +chr11 5015 5017 single: 19 0.0526 0,0.216 single: 28 0.107 0,0.246 pair: 0.0545 0 -0.109,0.179 p_acc: 0.0842 p_fet: 0.638 +chr11 5025 5027 single: 20 0.05 0,0.207 single: 26 0.192 0.0338,0.351 pair: 0.142 0 -0.0356,0.283 p_acc: 0.034 p_fet: 0.212 +chr11 5036 5038 single: 16 0.125 0,0.326 single: 25 0.04 0,0.17 pair: -0.085 -0 -0.266,0.057 p_acc: 0.0592 p_fet: 0.55 +chr11 5047 5049 single: 17 0 0,0.153 single: 22 0 0,0.122 pair: 0 0 -0.123,0.088 p_acc: 0.188 p_fet: 1 +chr11 5051 5053 single: 14 0 0,0.181 single: 21 0.0476 0,0.198 pair: 0.0476 0 -0.115,0.157 p_acc: 0.109 p_fet: 1 +chr11 5053 5055 single: 16 0 0,0.162 single: 21 0 0,0.127 pair: 0 0 -0.13,0.0914 p_acc: 0.179 p_fet: 1 +chr11 5097 5099 single: 20 0 0,0.133 single: 24 0 0,0.113 pair: 0 0 -0.105,0.0829 p_acc: 0.209 p_fet: 1 +chr11 5099 5101 single: 18 0 0,0.146 single: 25 0.04 0,0.17 pair: 0.04 0 -0.0902,0.136 p_acc: 0.129 p_fet: 1 +chr11 5104 5106 single: 18 0 0,0.146 single: 23 0.0435 0,0.183 pair: 0.0435 0 -0.0867,0.149 p_acc: 0.121 p_fet: 1 +chr11 5106 5108 single: 17 0.0588 0,0.238 single: 22 0 0,0.122 pair: -0.0588 -0 -0.206,0.053 p_acc: 0.0899 p_fet: 0.436 +chr11 5114 5116 single: 18 0 0,0.146 single: 19 0 0,0.139 pair: 0 0 -0.112,0.105 p_acc: 0.182 p_fet: 1 +chr11 5120 5122 single: 17 0.0588 0,0.238 single: 20 0.1 0,0.271 pair: 0.0412 0 -0.133,0.194 p_acc: 0.0825 p_fet: 1 +chr11 5124 5126 single: 17 0.0588 0,0.238 single: 18 0 0,0.146 pair: -0.0588 -0 -0.201,0.073 p_acc: 0.0919 p_fet: 0.486 +chr11 5140 5142 single: 20 0.1 0,0.271 single: 19 0.0526 0,0.216 pair: -0.0474 -0 -0.2,0.114 p_acc: 0.0828 p_fet: 1 +chr11 5144 5146 single: 18 0.0556 0,0.226 single: 18 0 0,0.146 pair: -0.0556 -0 -0.19,0.0758 p_acc: 0.0971 p_fet: 1 +chr11 5149 5151 single: 17 0.0588 0,0.238 single: 16 0 0,0.162 pair: -0.0588 -0 -0.198,0.0867 p_acc: 0.0923 p_fet: 1 +chr11 5151 5153 single: 16 0.0625 0,0.25 single: 15 0 0,0.171 pair: -0.0625 -0 -0.208,0.0916 p_acc: 0.0874 p_fet: 1 +chr11 5157 5159 single: 16 0.0625 0,0.25 single: 15 0.133 0,0.344 pair: 0.0708 0 -0.12,0.26 p_acc: 0.0635 p_fet: 0.6 +chr11 5159 5161 single: 17 0.0588 0,0.238 single: 15 0.0667 0,0.264 pair: 0.00784 0 -0.153,0.185 p_acc: 0.0894 p_fet: 1 +chr11 5166 5168 single: 14 0.143 0,0.363 single: 16 0 0,0.162 pair: -0.143 -0 -0.322,0.0318 p_acc: 0.0346 p_fet: 0.209 +chr11 5180 5182 single: 18 0 0,0.146 single: 13 0.0769 0,0.297 pair: 0.0769 0 -0.0593,0.258 p_acc: 0.0696 p_fet: 0.419 +chr11 5185 5187 single: 14 0.0714 0,0.279 single: 12 0 0,0.206 pair: -0.0714 -0 -0.23,0.115 p_acc: 0.0775 p_fet: 1 +chr11 5190 5192 single: 16 0.25 0.039,0.461 single: 10 0 0,0.238 pair: -0.25 -0 -0.404,0.017 p_acc: 0.0169 p_fet: 0.136 +chr11 5197 5199 single: 15 0.0667 0,0.264 single: 10 0 0,0.238 pair: -0.0667 -0 -0.209,0.149 p_acc: 0.081 p_fet: 1 +chr11 5209 5211 single: 15 0.133 0,0.344 single: 9 0.111 0,0.394 pair: -0.0222 -0 -0.22,0.252 p_acc: 0.0597 p_fet: 1 +chr11 5211 5213 single: 17 0.0588 0,0.238 single: 9 0 0,0.259 pair: -0.0588 -0 -0.181,0.176 p_acc: 0.0868 p_fet: 1 +chr11 5227 5229 single: 18 0 0,0.146 single: 9 0.111 0,0.394 pair: 0.111 0 -0.0382,0.354 p_acc: 0.0452 p_fet: 0.333 +chr11 5231 5233 single: 17 0.0588 0,0.238 single: 11 0.0909 0,0.339 pair: 0.0321 0 -0.134,0.256 p_acc: 0.0735 p_fet: 1 +chr11 5245 5247 single: 18 0 0,0.146 single: 13 0 0,0.193 pair: 0 0 -0.103,0.155 p_acc: 0.154 p_fet: 1 +chr11 5282 5284 single: 15 0 0,0.171 single: 12 0 0,0.206 pair: 0 0 -0.124,0.163 p_acc: 0.139 p_fet: 1 +chr11 5285 5287 single: 17 0 0,0.153 single: 12 0.167 0,0.41 pair: 0.167 0 -0.012,0.369 p_acc: 0.0255 p_fet: 0.163 +chr11 5291 5293 single: 18 0.0556 0,0.226 single: 13 0.0769 0,0.297 pair: 0.0214 0 -0.135,0.219 p_acc: 0.0833 p_fet: 1 +chr11 5300 5302 single: 21 0 0,0.127 single: 13 0 0,0.193 pair: 0 0 -0.0866,0.159 p_acc: 0.161 p_fet: 1 +chr11 5318 5320 single: 22 0.136 0,0.304 single: 11 0.364 0.109,0.618 pair: 0.227 0 -0.0239,0.469 p_acc: 0.0193 p_fet: 0.186 +chr11 5342 5344 single: 21 0.0476 0,0.198 single: 12 0.167 0,0.41 pair: 0.119 0 -0.0554,0.339 p_acc: 0.0427 p_fet: 0.538 +chr11 5351 5353 single: 20 0.3 0.107,0.493 single: 14 0.429 0.196,0.662 pair: 0.129 0 -0.136,0.373 p_acc: 0.0382 p_fet: 0.487 +chr11 5379 5381 single: 16 0.125 0,0.326 single: 16 0 0,0.162 pair: -0.125 -0 -0.285,0.043 p_acc: 0.0426 p_fet: 0.484 +chr11 5381 5383 single: 16 0.0625 0,0.25 single: 16 0 0,0.162 pair: -0.0625 -0 -0.21,0.0836 p_acc: 0.0872 p_fet: 1 +chr11 5394 5396 single: 15 0.0667 0,0.264 single: 15 0.0667 0,0.264 pair: 0 0 -0.178,0.178 p_acc: 0.0851 p_fet: 1 +chr11 5410 5412 single: 14 0 0,0.181 single: 21 0 0,0.127 pair: 0 0 -0.148,0.0884 p_acc: 0.168 p_fet: 1 +chr11 5414 5416 single: 14 0.0714 0,0.279 single: 21 0.143 0,0.316 pair: 0.0714 0 -0.14,0.228 p_acc: 0.0651 p_fet: 0.635 +chr11 5417 5419 single: 15 0 0,0.171 single: 20 0 0,0.133 pair: 0 0 -0.137,0.0951 p_acc: 0.171 p_fet: 1 +chr11 5472 5474 single: 22 0 0,0.122 single: 23 0.174 0.00602,0.342 pair: 0.174 0.0232 0.0232,0.31 p_acc: 0.0144 p_fet: 0.109 +chr11 5498 5500 single: 23 0.0435 0,0.183 single: 21 0.143 0,0.316 pair: 0.0994 0 -0.0544,0.254 p_acc: 0.0529 p_fet: 0.335 +chr11 5532 5534 single: 30 0.0333 0,0.144 single: 26 0.115 0,0.263 pair: 0.0821 0 -0.0401,0.214 p_acc: 0.0625 p_fet: 0.328 +chr11 5535 5537 single: 31 0.0323 0,0.14 single: 26 0.231 0.0678,0.394 pair: 0.199 0.0474 0.0474,0.343 p_acc: 0.00812 p_fet: 0.0394 +chr11 5538 5540 single: 33 0.242 0.0967,0.388 single: 26 0.308 0.136,0.479 pair: 0.0653 0 -0.121,0.252 p_acc: 0.0604 p_fet: 0.769 +chr11 5551 5553 single: 29 0.138 0,0.28 single: 23 0.348 0.163,0.532 pair: 0.21 0.0113 0.0113,0.388 p_acc: 0.0154 p_fet: 0.102 +chr11 5564 5566 single: 27 0.037 0,0.159 single: 19 0 0,0.139 pair: -0.037 -0 -0.127,0.087 p_acc: 0.138 p_fet: 1 +chr11 5576 5578 single: 28 0.0357 0,0.153 single: 21 0.0476 0,0.198 pair: 0.0119 0 -0.0935,0.146 p_acc: 0.126 p_fet: 1 +chr11 5600 5602 single: 25 0.08 0,0.223 single: 24 0.0833 0,0.231 pair: 0.00333 0 -0.136,0.146 p_acc: 0.101 p_fet: 1 +chr11 5622 5624 single: 21 0.0476 0,0.198 single: 19 0.211 0.02,0.401 pair: 0.163 0 -0.0196,0.333 p_acc: 0.0266 p_fet: 0.172 +chr11 5624 5626 single: 20 0.2 0.0156,0.384 single: 17 0.235 0.0315,0.439 pair: 0.0353 0 -0.179,0.255 p_acc: 0.0594 p_fet: 1 +chr11 5641 5643 single: 19 0 0,0.139 single: 17 0.0588 0,0.238 pair: 0.0588 0 -0.0672,0.202 p_acc: 0.0915 p_fet: 0.472 +chr11 5667 5669 single: 16 0 0,0.162 single: 24 0.0417 0,0.176 pair: 0.0417 0 -0.103,0.139 p_acc: 0.123 p_fet: 1 +chr11 5720 5722 single: 22 0 0,0.122 single: 24 0.125 0,0.282 pair: 0.125 0 -0.0104,0.251 p_acc: 0.0329 p_fet: 0.235 +chr11 5816 5818 single: 14 0 0,0.181 single: 21 0.238 0.0554,0.421 pair: 0.238 0.0251 0.0251,0.376 p_acc: 0.0115 p_fet: 0.0689 +chr11 5828 5830 single: 12 0 0,0.206 single: 21 0.238 0.0554,0.421 pair: 0.238 0.00538 0.00538,0.371 p_acc: 0.0145 p_fet: 0.133 +chr11 5830 5832 single: 13 0 0,0.193 single: 22 0.0455 0,0.19 pair: 0.0455 0 -0.128,0.148 p_acc: 0.112 p_fet: 1 +chr11 5843 5845 single: 11 0.0909 0,0.339 single: 18 0.0556 0,0.226 pair: -0.0354 -0 -0.259,0.125 p_acc: 0.0739 p_fet: 1 +chr11 5905 5907 single: 3 0.333 0,0.751 single: NA NA NA,NA pair: NA NA NA,NA p_acc: NA p_fet: NA +chr11 5969 5971 single: 10 0.3 0.035,0.565 single: 15 0.267 0.0481,0.485 pair: -0.0333 -0 -0.322,0.235 p_acc: 0.0461 p_fet: 1 +chr11 5972 5974 single: 11 0.0909 0,0.339 single: 15 0 0,0.171 pair: -0.0909 -0 -0.294,0.0699 p_acc: 0.0601 p_fet: 0.423 +chr11 6023 6025 single: 11 0.0909 0,0.339 single: 18 0.333 0.128,0.538 pair: 0.242 0 -0.0451,0.422 p_acc: 0.0199 p_fet: 0.202 +chr11 6044 6046 single: 10 0 0,0.238 single: 12 0 0,0.206 pair: 0 0 -0.187,0.15 p_acc: 0.117 p_fet: 1 +chr11 6049 6051 single: 10 0 0,0.238 single: 12 0.0833 0,0.316 pair: 0.0833 0 -0.134,0.259 p_acc: 0.0677 p_fet: 1 +chr11 6076 6078 single: 11 0.0909 0,0.339 single: 7 0 0,0.312 pair: -0.0909 -0 -0.266,0.195 p_acc: 0.0616 p_fet: 1 +chr11 6089 6091 single: 9 0 0,0.259 single: 10 0 0,0.238 pair: 0 0 -0.2,0.177 p_acc: 0.105 p_fet: 1 +chr11 6099 6101 single: 6 0 0,0.348 single: 9 0.111 0,0.394 pair: 0.111 0 -0.21,0.312 p_acc: 0.0524 p_fet: 1 +chr11 6148 6150 single: 9 0 0,0.259 single: 13 0 0,0.193 pair: 0 0 -0.209,0.135 p_acc: 0.115 p_fet: 1 +chr11 6156 6158 single: 8 0 0,0.283 single: 14 0 0,0.181 pair: 0 0 -0.235,0.121 p_acc: 0.111 p_fet: 1 +chr11 6164 6166 single: 8 0 0,0.283 single: 12 0 0,0.206 pair: 0 0 -0.23,0.143 p_acc: 0.106 p_fet: 1 +chr11 6168 6170 single: 8 0.125 0,0.429 single: 14 0 0,0.181 pair: -0.125 -0 -0.38,0.0569 p_acc: 0.0427 p_fet: 0.364 +chr11 6208 6210 single: 10 0.1 0,0.364 single: 10 0.2 0,0.47 pair: 0.1 0 -0.177,0.347 p_acc: 0.0455 p_fet: 1 +chr11 6226 6228 single: 10 0 0,0.238 single: 10 0 0,0.238 pair: 0 0 -0.181,0.181 p_acc: 0.109 p_fet: 1 +chr11 6239 6241 single: 5 0 0,0.393 single: 12 0 0,0.206 pair: 0 0 -0.336,0.126 p_acc: 0.0829 p_fet: 1 +chr11 6247 6249 single: 11 0.0909 0,0.339 single: 11 0.0909 0,0.339 pair: 0 0 -0.226,0.226 p_acc: 0.0655 p_fet: 1 +chr11 6251 6253 single: 13 0.0769 0,0.297 single: 9 0.222 0,0.507 pair: 0.145 0 -0.105,0.403 p_acc: 0.037 p_fet: 0.544 +chr11 6253 6255 single: 13 0.0769 0,0.297 single: 9 0.111 0,0.394 pair: 0.0342 0 -0.172,0.291 p_acc: 0.0615 p_fet: 1 +chr11 6258 6260 single: 12 0 0,0.206 single: 11 0.0909 0,0.339 pair: 0.0909 0 -0.0993,0.287 p_acc: 0.0621 p_fet: 0.478 +chr11 6269 6271 single: 15 0 0,0.171 single: 12 0.0833 0,0.316 pair: 0.0833 0 -0.0753,0.272 p_acc: 0.0659 p_fet: 0.444 +chr11 6272 6274 single: 15 0.2 0,0.417 single: 11 0.0909 0,0.339 pair: -0.109 -0 -0.307,0.152 p_acc: 0.0476 p_fet: 0.614 +chr11 6282 6284 single: 15 0.0667 0,0.264 single: 10 0.1 0,0.364 pair: 0.0333 0 -0.151,0.272 p_acc: 0.0675 p_fet: 1 +chr11 6293 6295 single: 16 0 0,0.162 single: 14 0.143 0,0.363 pair: 0.143 0 -0.0318,0.322 p_acc: 0.0346 p_fet: 0.209 +chr11 6297 6299 single: 18 0 0,0.146 single: 13 0 0,0.193 pair: 0 0 -0.103,0.155 p_acc: 0.154 p_fet: 1 +chr11 6300 6302 single: 15 0.133 0,0.344 single: 13 0.154 0,0.385 pair: 0.0205 0 -0.195,0.249 p_acc: 0.0617 p_fet: 1 +chr11 6304 6306 single: 17 0.118 0,0.31 single: 12 0.0833 0,0.316 pair: -0.0343 -0 -0.21,0.192 p_acc: 0.0696 p_fet: 1 +chr11 6312 6314 single: 20 0.05 0,0.207 single: 12 0 0,0.206 pair: -0.05 -0 -0.161,0.135 p_acc: 0.103 p_fet: 1 +chr11 6314 6316 single: 20 0.05 0,0.207 single: 12 0.167 0,0.41 pair: 0.117 0 -0.0623,0.337 p_acc: 0.044 p_fet: 0.54 +chr11 6318 6320 single: 20 0.05 0,0.207 single: 12 0 0,0.206 pair: -0.05 -0 -0.161,0.135 p_acc: 0.103 p_fet: 1 +chr11 6321 6323 single: 19 0 0,0.139 single: 13 0 0,0.193 pair: 0 0 -0.0972,0.157 p_acc: 0.156 p_fet: 1 +chr11 6323 6325 single: 20 0 0,0.133 single: 12 0 0,0.206 pair: 0 0 -0.0897,0.171 p_acc: 0.153 p_fet: 1 +chr11 6350 6352 single: 18 0.0556 0,0.226 single: 12 0 0,0.206 pair: -0.0556 -0 -0.179,0.13 p_acc: 0.0952 p_fet: 1 +chr11 6356 6358 single: 19 0.0526 0,0.216 single: 10 0.1 0,0.364 pair: 0.0474 0 -0.11,0.287 p_acc: 0.0684 p_fet: 1 +chr11 6358 6360 single: 20 0.05 0,0.207 single: 11 0 0,0.221 pair: -0.05 -0 -0.158,0.149 p_acc: 0.101 p_fet: 1 +chr11 6365 6367 single: 19 0 0,0.139 single: 11 0 0,0.221 pair: 0 0 -0.0929,0.184 p_acc: 0.143 p_fet: 1 +chr11 6371 6373 single: 18 0.0556 0,0.226 single: 13 0.0769 0,0.297 pair: 0.0214 0 -0.135,0.219 p_acc: 0.0833 p_fet: 1 +chr11 6430 6432 single: 14 0 0,0.181 single: 19 0.105 0,0.283 pair: 0.105 0 -0.0731,0.239 p_acc: 0.0573 p_fet: 0.496 +chr11 6432 6434 single: 16 0.0625 0,0.25 single: 19 0.105 0,0.283 pair: 0.0428 0 -0.141,0.202 p_acc: 0.0788 p_fet: 1 +chr11 6442 6444 single: 20 0.1 0,0.271 single: 22 0.0909 0,0.249 pair: -0.00909 -0 -0.174,0.147 p_acc: 0.0879 p_fet: 1 +chr11 6449 6451 single: 19 0 0,0.139 single: 24 0.0417 0,0.176 pair: 0.0417 0 -0.0824,0.143 p_acc: 0.126 p_fet: 1 +chr11 6491 6493 single: 25 0.04 0,0.17 single: 18 0.278 0.0771,0.478 pair: 0.238 0.0497 0.0497,0.416 p_acc: 0.00794 p_fet: 0.0672 +chr11 6526 6528 single: 35 0.0286 0,0.125 single: 26 0.115 0,0.263 pair: 0.0868 0 -0.0247,0.219 p_acc: 0.0549 p_fet: 0.303 +chr11 6560 6562 single: 25 0.24 0.0727,0.407 single: 30 0.233 0.0816,0.385 pair: -0.00667 -0 -0.195,0.173 p_acc: 0.0714 p_fet: 1 +chr11 6596 6598 single: 38 0.421 0.27,0.572 single: 30 0.6 0.433,0.767 pair: 0.179 0 -0.0236,0.356 p_acc: 0.0237 p_fet: 0.222 +chr11 6730 6732 single: 41 0.366 0.223,0.509 single: 31 0.516 0.349,0.683 pair: 0.15 0 -0.0438,0.327 p_acc: 0.0316 p_fet: 0.236 +chr11 6857 6859 single: 33 0.212 0.0704,0.354 single: 46 0.239 0.116,0.362 pair: 0.027 0 -0.135,0.173 p_acc: 0.0826 p_fet: 1 +chr11 6900 6902 single: 29 0.862 0.72,1 single: 46 0.804 0.687,0.921 pair: -0.0577 -0 -0.187,0.0999 p_acc: 0.0766 p_fet: 0.755 +chr11 6902 6904 single: 29 0.483 0.311,0.655 single: 46 0.804 0.687,0.921 pair: 0.322 0.132 0.132,0.479 p_acc: 0.00124 p_fet: 0.00524 +chr11 6979 6981 single: 25 0.28 0.108,0.452 single: 39 0.487 0.337,0.638 pair: 0.207 0 -0.00347,0.377 p_acc: 0.0177 p_fet: 0.123 +chr11 7085 7087 single: 26 0.346 0.172,0.521 single: 27 0.704 0.537,0.871 pair: 0.358 0.124 0.124,0.528 p_acc: 0.00216 p_fet: 0.0135 +chr11 7166 7168 single: 19 0.263 0.0688,0.458 single: 27 0.259 0.0961,0.422 pair: -0.0039 -0 -0.221,0.195 p_acc: 0.0632 p_fet: 1 +chr11 7336 7338 single: 17 0.294 0.0867,0.502 single: 13 0.769 0.534,1 pair: 0.475 0.154 0.154,0.653 p_acc: 0.00186 p_fet: 0.0253 +chr11 7583 7585 single: 26 0.154 6.6e-05,0.308 single: 34 0.176 0.0419,0.311 pair: 0.0226 0 -0.145,0.172 p_acc: 0.0825 p_fet: 1 +chr11 7633 7635 single: 21 0.0952 0,0.259 single: 26 0.154 6.6e-05,0.308 pair: 0.0586 0 -0.116,0.209 p_acc: 0.0723 p_fet: 0.678 +chr11 7655 7657 single: 15 0 0,0.171 single: 21 0.143 0,0.316 pair: 0.143 0 -0.0375,0.275 p_acc: 0.0356 p_fet: 0.25 +chr11 7673 7675 single: 16 0 0,0.162 single: 17 0 0,0.153 pair: 0 0 -0.125,0.115 p_acc: 0.165 p_fet: 1 +chr11 7679 7681 single: 17 0 0,0.153 single: 21 0.0476 0,0.198 pair: 0.0476 0 -0.0895,0.162 p_acc: 0.111 p_fet: 1 +chr11 7688 7690 single: 15 0 0,0.171 single: 18 0.167 0,0.359 pair: 0.167 0 -0.0215,0.317 p_acc: 0.0269 p_fet: 0.233 +chr11 7695 7697 single: 15 0.0667 0,0.264 single: 21 0 0,0.127 pair: -0.0667 -0 -0.23,0.0515 p_acc: 0.079 p_fet: 0.417 +chr11 7729 7731 single: 14 0 0,0.181 single: 21 0.19 0.0119,0.369 pair: 0.19 0 -0.0108,0.326 p_acc: 0.021 p_fet: 0.133 +chr11 7748 7750 single: 15 0 0,0.171 single: 23 0.0435 0,0.183 pair: 0.0435 0 -0.11,0.144 p_acc: 0.118 p_fet: 1 +chr11 7825 7827 single: 18 0 0,0.146 single: 20 0.05 0,0.207 pair: 0.05 0 -0.0806,0.171 p_acc: 0.107 p_fet: 1 +chr11 7866 7868 single: 17 0 0,0.153 single: 22 0.0455 0,0.19 pair: 0.0455 0 -0.0916,0.154 p_acc: 0.116 p_fet: 1 +chr11 7878 7880 single: 15 0.0667 0,0.264 single: 21 0.0952 0,0.259 pair: 0.0286 0 -0.161,0.177 p_acc: 0.0837 p_fet: 1 +chr11 7882 7884 single: 13 0.0769 0,0.297 single: 20 0.3 0.107,0.493 pair: 0.223 0 -0.0326,0.392 p_acc: 0.0204 p_fet: 0.202 +chr11 8027 8029 single: 26 0.0385 0,0.164 single: 18 0.167 0,0.359 pair: 0.128 0 -0.0241,0.302 p_acc: 0.0357 p_fet: 0.289 +chr11 8033 8035 single: 27 0.037 0,0.159 single: 16 0.0625 0,0.25 pair: 0.0255 0 -0.0862,0.195 p_acc: 0.103 p_fet: 1 +chr11 8303 8305 single: 36 0.0556 0,0.161 single: 23 0.0435 0,0.183 pair: -0.0121 -0 -0.106,0.119 p_acc: 0.131 p_fet: 1 +chr11 8414 8416 single: 16 0.0625 0,0.25 single: 27 0.444 0.268,0.621 pair: 0.382 0.14 0.14,0.521 p_acc: 0.00165 p_fet: 0.0143 +chr11 8583 8585 single: 24 0.0833 0,0.231 single: 27 0.148 0,0.298 pair: 0.0648 0 -0.0948,0.209 p_acc: 0.0723 p_fet: 0.671 +chr11 8678 8680 single: 19 0 0,0.139 single: 17 0 0,0.153 pair: 0 0 -0.104,0.119 p_acc: 0.178 p_fet: 1 +chr11 8692 8694 single: 23 0.0435 0,0.183 single: 19 0.0526 0,0.216 pair: 0.00915 0 -0.116,0.155 p_acc: 0.113 p_fet: 1 +chr11 8755 8757 single: 26 0 0,0.105 single: 24 0.0417 0,0.176 pair: 0.0417 0 -0.0523,0.15 p_acc: 0.126 p_fet: 0.48 +chr11 8786 8788 single: 25 0 0,0.109 single: 19 0 0,0.139 pair: 0 0 -0.0781,0.112 p_acc: 0.207 p_fet: 1 +chr11 8812 8814 single: 22 0.0909 0,0.249 single: 21 0 0,0.127 pair: -0.0909 -0 -0.217,0.038 p_acc: 0.0592 p_fet: 0.488 +chr11 8829 8831 single: 20 0 0,0.133 single: 22 0.136 0,0.304 pair: 0.136 0 -0.0114,0.27 p_acc: 0.0304 p_fet: 0.233 +chr11 8836 8838 single: 21 0 0,0.127 single: 21 0.0476 0,0.198 pair: 0.0476 0 -0.0664,0.167 p_acc: 0.112 p_fet: 1 +chr11 8855 8857 single: 17 0.0588 0,0.238 single: 22 0.0909 0,0.249 pair: 0.0321 0 -0.14,0.174 p_acc: 0.0887 p_fet: 1 +chr11 8902 8904 single: 17 0 0,0.153 single: 15 0.333 0.111,0.555 pair: 0.333 0.104 0.104,0.508 p_acc: 0.00262 p_fet: 0.0149 +chr11 8914 8916 single: 20 0.35 0.153,0.547 single: 13 0.308 0.0724,0.543 pair: -0.0423 -0 -0.281,0.229 p_acc: 0.0495 p_fet: 1 +chr11 8920 8922 single: 22 0 0,0.122 single: 12 0 0,0.206 pair: 0 0 -0.0801,0.173 p_acc: 0.157 p_fet: 1 +chr11 8948 8950 single: 33 0 0,0.0843 single: 17 0.0588 0,0.238 pair: 0.0588 0 -0.0234,0.214 p_acc: 0.0814 p_fet: 0.34 +chr11 8975 8977 single: 42 0.0476 0,0.139 single: 19 0 0,0.139 pair: -0.0476 -0 -0.11,0.0832 p_acc: 0.131 p_fet: 1 +chr11 9127 9129 single: 41 0.0244 0,0.108 single: 31 0.0968 0,0.225 pair: 0.0724 0 -0.0228,0.187 p_acc: 0.0662 p_fet: 0.308 +chr11 9136 9138 single: 42 0.0476 0,0.139 single: 33 0.0606 0,0.174 pair: 0.013 0 -0.0771,0.12 p_acc: 0.143 p_fet: 1 +chr11 9227 9229 single: 45 0.0444 0,0.131 single: 38 0.0526 0,0.153 pair: 0.00819 0 -0.0754,0.103 p_acc: 0.16 p_fet: 1 +chr11 9270 9272 single: 40 0.025 0,0.111 single: 33 0.0909 0,0.213 pair: 0.0659 0 -0.0287,0.175 p_acc: 0.0758 p_fet: 0.322 +chr11 9301 9303 single: 40 0.175 0.0523,0.298 single: 33 0.0303 0,0.132 pair: -0.145 -0.0191 -0.253,-0.0191 p_acc: 0.0174 p_fet: 0.0652 +chr11 9371 9373 single: 25 0 0,0.109 single: 32 0 0,0.0868 pair: 0 0 -0.0872,0.0628 p_acc: 0.257 p_fet: 1 +chr11 9380 9382 single: 25 0.04 0,0.17 single: 31 0 0,0.0894 pair: -0.04 -0 -0.147,0.0405 p_acc: 0.129 p_fet: 0.446 +chr11 9447 9449 single: 17 0 0,0.153 single: 30 0 0,0.0921 pair: 0 0 -0.129,0.0611 p_acc: 0.207 p_fet: 1 +chr11 9478 9480 single: 16 0 0,0.162 single: 21 0.0476 0,0.198 pair: 0.0476 0 -0.097,0.16 p_acc: 0.111 p_fet: 1 +chr11 9510 9512 single: 14 0 0,0.181 single: 23 0.0435 0,0.183 pair: 0.0435 0 -0.119,0.143 p_acc: 0.117 p_fet: 1 +chr11 9588 9590 single: 20 0 0,0.133 single: 18 0.111 0,0.296 pair: 0.111 0 -0.0292,0.261 p_acc: 0.0448 p_fet: 0.218 +chr11 9677 9679 single: 11 0.0909 0,0.339 single: 13 0.231 0,0.466 pair: 0.14 0 -0.131,0.354 p_acc: 0.0398 p_fet: 0.596 +chr11 9697 9699 single: 14 0 0,0.181 single: 15 0.2 0,0.417 pair: 0.2 0 -0.00842,0.371 p_acc: 0.02 p_fet: 0.224 +chr11 9709 9711 single: 11 0 0,0.221 single: 18 0.111 0,0.296 pair: 0.111 0 -0.104,0.245 p_acc: 0.0574 p_fet: 0.512 +chr11 9729 9731 single: 6 0.167 0,0.521 single: 16 0 0,0.162 pair: -0.167 -0 -0.475,0.0224 p_acc: 0.0282 p_fet: 0.273 +chr11 9799 9801 single: NA NA NA,NA single: 7 0 0,0.312 pair: NA NA NA,NA p_acc: NA p_fet: NA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/SE_dmr_M3_g1.G.bed_vs_g2.G.bed.txt.dmr Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,2 @@ +chr11 316 1705 - 35 30 5 -1 +chr11 3052 3674 - 17 16 1 -1
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/SE_g1.G.bed Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,309 @@ +#chrom start end ratio totalC methC strand next Plus totalC methC Minus totalC methC localSeq +chr11 41 43 0 3 0 B G + 1 0 - 2 0 AGCGG +chr11 48 50 0 5 0 B G + 2 0 - 3 0 CCCGG +chr11 56 58 0 6 0 B G + 2 0 - 4 0 CCCGC +chr11 59 61 0 8 0 B G + 2 0 - 6 0 GCCGT +chr11 101 103 0.0769 13 1 B G + 3 0 - 10 1 GTCGC +chr11 140 142 0 16 0 B G + 3 0 - 13 0 GGCGA +chr11 144 146 0 14 0 B G + 2 0 - 12 0 AACGG +chr11 210 212 0.133 15 2 B G + 2 0 - 13 2 CCCGA +chr11 215 217 0.263 19 5 B G + 3 1 - 16 4 CTCGC +chr11 316 318 0.0833 24 2 B G + 4 0 - 20 2 CTCGC +chr11 331 333 0.037 27 1 B G + 5 1 - 22 0 TGCGT +chr11 400 402 0.0588 34 2 B G + 3 0 - 31 2 CACGC +chr11 407 409 0 33 0 B G + 3 0 - 30 0 CTCGT +chr11 445 447 0.08 25 2 B G + 3 0 - 22 2 CACGC +chr11 469 471 0.0385 26 1 B G + 4 0 - 22 1 ACCGC +chr11 546 548 0.1 20 2 B G + 9 1 - 11 1 GTCGA +chr11 666 668 0.05 20 1 B G + 9 1 - 11 0 TGCGT +chr11 694 696 0.318 22 7 B G + 10 4 - 12 3 TGCGT +chr11 712 714 0.0714 28 2 B G + 13 0 - 15 2 ACCGA +chr11 721 723 0.0357 28 1 B G + 11 0 - 17 1 CCCGG +chr11 737 739 0.037 27 1 B G + 9 0 - 18 1 GGCGG +chr11 753 755 0.087 23 2 B G + 8 1 - 15 1 TCCGG +chr11 762 764 0.037 27 1 B G + 9 1 - 18 0 CCCGT +chr11 792 794 0.324 37 12 B G + 11 1 - 26 11 GCCGT +chr11 798 800 0.306 36 11 B G + 10 2 - 26 9 TGCGC +chr11 816 818 0.0303 33 1 B G + 8 1 - 25 0 TTCGC +chr11 830 832 0.405 37 15 B G + 7 1 - 30 14 TGCGA +chr11 954 956 0 47 0 B G + 17 0 - 30 0 CCCGT +chr11 977 979 0.255 47 12 B G + 20 5 - 27 7 CCCGG +chr11 1006 1008 0 38 0 B G + 19 0 - 19 0 ACCGT +chr11 1066 1068 0.367 30 11 B G + 17 7 - 13 4 GGCGG +chr11 1116 1118 0.182 22 4 B G + 13 1 - 9 3 CACGG +chr11 1145 1147 0.556 18 10 B G + 8 5 - 10 5 CCCGA +chr11 1260 1262 0.0556 18 1 B G + 12 1 - 6 0 GACGA +chr11 1320 1322 0.118 17 2 B G + 11 1 - 6 1 TCCGC +chr11 1559 1561 0.194 36 7 B G + 25 4 - 11 3 TACGC +chr11 1574 1576 0.152 33 5 B G + 20 4 - 13 1 ATCGT +chr11 1592 1594 0.343 35 12 B G + 22 6 - 13 6 CTCGG +chr11 1609 1611 0.0588 34 2 B G + 23 2 - 11 0 CTCGG +chr11 1632 1634 0.0556 36 2 B G + 23 2 - 13 0 GACGG +chr11 1642 1644 0.188 32 6 B G + 18 5 - 14 1 CCCGC +chr11 1680 1682 0.0882 34 3 B G + 21 3 - 13 0 GTCGC +chr11 1689 1691 0.2 35 7 B G + 21 4 - 14 3 CTCGG +chr11 1703 1705 0.262 42 11 B G + 22 7 - 20 4 ACCGA +chr11 1733 1735 0.512 43 22 B G + 25 14 - 18 8 CTCGT +chr11 1766 1768 0.13 46 6 B G + 25 5 - 21 1 TCCGT +chr11 1869 1871 0.244 45 11 B G + 21 5 - 24 6 TACGT +chr11 2040 2042 0 37 0 B G + 18 0 - 19 0 AACGA +chr11 2104 2106 0.027 37 1 B G + 19 0 - 18 1 AACGA +chr11 2148 2150 0.613 31 19 B G + 14 11 - 17 8 GGCGT +chr11 2360 2362 0.262 42 11 B G + 23 6 - 19 5 GCCGG +chr11 2384 2386 0.382 34 13 B G + 18 6 - 16 7 TACGG +chr11 2454 2456 0.171 41 7 B G + 29 4 - 12 3 TCCGC +chr11 2621 2623 0 9 0 B G + 6 0 - 3 0 ATCGT +chr11 2648 2650 0 10 0 B G + 7 0 - 3 0 GGCGT +chr11 2665 2667 0 13 0 B G + 9 0 - 4 0 GCCGC +chr11 2667 2669 0 17 0 B G + 13 0 - 4 0 CGCGG +chr11 2673 2675 0 13 0 B G + 9 0 - 4 0 GGCGG +chr11 2676 2678 0 17 0 B G + 13 0 - 4 0 GGCGA +chr11 2685 2687 0.0625 16 1 B G + 12 1 - 4 0 GGCGG +chr11 2688 2690 0 19 0 B G + 15 0 - 4 0 GGCGC +chr11 2691 2693 0 20 0 B G + 16 0 - 4 0 GCCGG +chr11 2713 2715 0 22 0 B G + 17 0 - 5 0 TTCGG +chr11 2723 2725 0 19 0 B G + 16 0 - 3 0 GTCGC +chr11 2727 2729 0 20 0 B G + 16 0 - 4 0 CACGG +chr11 2731 2733 0.0588 17 1 B G + 13 0 - 4 1 GCCGG +chr11 2738 2740 0 18 0 B G + 14 0 - 4 0 CCCGC +chr11 2767 2769 0 15 0 B G + 11 0 - 4 0 GCCGG +chr11 2778 2780 0.0833 12 1 B G + 8 0 - 4 1 TCCGG +chr11 2788 2790 0 8 0 B G + 5 0 - 3 0 GCCGC +chr11 2792 2794 0.143 7 1 B G + 4 0 - 3 1 CCCGT +chr11 2810 2812 0 3 0 B G + 1 0 - 2 0 ACCGA +chr11 2825 2827 0 4 0 B G + 3 0 - 1 0 TCCGC +chr11 3031 3033 0.0769 13 1 B G + 6 0 - 7 1 CTCGG +chr11 3034 3036 0 13 0 B G + 6 0 - 7 0 GGCGG +chr11 3052 3054 0.0667 15 1 B G + 6 0 - 9 1 ATCGA +chr11 3095 3097 0.273 11 3 B G + 4 2 - 7 1 ATCGG +chr11 3117 3119 0.0833 12 1 B G + 3 0 - 9 1 ACCGT +chr11 3273 3275 0.105 38 4 B G + 11 2 - 27 2 AGCGC +chr11 3283 3285 0.027 37 1 B G + 11 1 - 26 0 ACCGG +chr11 3323 3325 0.0571 35 2 B G + 13 2 - 22 0 ACCGC +chr11 3424 3426 0.0667 30 2 B G + 16 0 - 14 2 GACGC +chr11 3452 3454 0 27 0 B G + 17 0 - 10 0 ACCGT +chr11 3484 3486 0.04 25 1 B G + 21 1 - 4 0 ATCGA +chr11 3578 3580 0.263 19 5 B G + 14 5 - 5 0 TCCGC +chr11 3595 3597 0 20 0 B G + 15 0 - 5 0 GACGT +chr11 3611 3613 0.0526 19 1 B G + 12 0 - 7 1 CCCGG +chr11 3617 3619 0 19 0 B G + 12 0 - 7 0 CTCGG +chr11 3639 3641 0.125 16 2 B G + 8 1 - 8 1 TCCGG +chr11 3646 3648 0.0588 17 1 B G + 9 0 - 8 1 ACCGC +chr11 3665 3667 0.0769 13 1 B G + 8 0 - 5 1 GCCGG +chr11 3672 3674 0 13 0 B G + 8 0 - 5 0 GTCGG +chr11 3677 3679 0 14 0 B G + 10 0 - 4 0 TTCGC +chr11 3693 3695 0 17 0 B G + 11 0 - 6 0 CTCGC +chr11 3704 3706 0 20 0 B G + 12 0 - 8 0 TCCGC +chr11 3707 3709 0 21 0 B G + 13 0 - 8 0 GCCGC +chr11 3717 3719 0.0455 22 1 B G + 12 1 - 10 0 TCCGC +chr11 3960 3962 0 21 0 B G + 2 0 - 19 0 CCCGA +chr11 3991 3993 0 20 0 B G + 2 0 - 18 0 GACGT +chr11 4056 4058 0 22 0 B G + 7 0 - 15 0 GACGC +chr11 4163 4165 0.0769 26 2 B G + 17 1 - 9 1 CACGT +chr11 4195 4197 0.0435 23 1 B G + 14 0 - 9 1 GGCGG +chr11 4202 4204 0 21 0 B G + 12 0 - 9 0 GTCGC +chr11 4207 4209 0.0556 18 1 B G + 11 0 - 7 1 TCCGG +chr11 4243 4245 0.133 30 4 B G + 21 3 - 9 1 GTCGG +chr11 4248 4250 0.0312 32 1 B G + 22 1 - 10 0 GGCGC +chr11 4284 4286 0.0882 34 3 B G + 22 1 - 12 2 TCCGC +chr11 4289 4291 0 33 0 B G + 19 0 - 14 0 TCCGG +chr11 4302 4304 0 34 0 B G + 18 0 - 16 0 ATCGT +chr11 4307 4309 0 31 0 B G + 16 0 - 15 0 CACGA +chr11 4314 4316 0 27 0 B G + 12 0 - 15 0 AACGG +chr11 4320 4322 0.04 25 1 B G + 11 0 - 14 1 ACCGT +chr11 4330 4332 0 23 0 B G + 8 0 - 15 0 AACGA +chr11 4340 4342 0.0455 22 1 B G + 6 0 - 16 1 TCCGT +chr11 4365 4367 0 20 0 B G + 6 0 - 14 0 GACGA +chr11 4393 4395 0 18 0 B G + 6 0 - 12 0 TTCGA +chr11 4403 4405 0 16 0 B G + 6 0 - 10 0 GCCGC +chr11 4405 4407 0 17 0 B G + 6 0 - 11 0 CGCGT +chr11 4420 4422 0.0714 14 1 B G + 5 0 - 9 1 GCCGA +chr11 4456 4458 0 14 0 B G + 6 0 - 8 0 GGCGC +chr11 4458 4460 0 14 0 B G + 7 0 - 7 0 CGCGG +chr11 4469 4471 0.0714 14 1 B G + 7 1 - 7 0 GCCGG +chr11 4482 4484 0.0667 15 1 B G + 8 1 - 7 0 CTCGA +chr11 4499 4501 0.0625 16 1 B G + 7 0 - 9 1 GGCGT +chr11 4519 4521 0.105 19 2 B G + 8 0 - 11 2 TCCGG +chr11 4523 4525 0.05 20 1 B G + 9 0 - 11 1 GCCGG +chr11 4532 4534 0 20 0 B G + 12 0 - 8 0 AGCGC +chr11 4549 4551 0.0476 21 1 B G + 11 0 - 10 1 TGCGG +chr11 4558 4560 0 21 0 B G + 12 0 - 9 0 ACCGC +chr11 4588 4590 0.0476 21 1 B G + 12 1 - 9 0 CACGT +chr11 4594 4596 0 20 0 B G + 11 0 - 9 0 TCCGG +chr11 4633 4635 0.0667 15 1 B G + 4 1 - 11 0 TTCGC +chr11 4692 4694 0.0667 15 1 B G + 8 1 - 7 0 CCCGG +chr11 4723 4725 0 16 0 B G + 8 0 - 8 0 ACCGA +chr11 4744 4746 0.0667 15 1 B G + 5 1 - 10 0 TTCGG +chr11 4756 4758 0 19 0 B G + 7 0 - 12 0 CACGG +chr11 4785 4787 0.0526 19 1 B G + 4 1 - 15 0 GGCGG +chr11 4789 4791 0.0476 21 1 B G + 5 0 - 16 1 GGCGC +chr11 4791 4793 0.19 21 4 B G + 5 4 - 16 0 CGCGT +chr11 4799 4801 0.0833 24 2 B G + 5 0 - 19 2 GCCGC +chr11 4845 4847 0.0417 24 1 B G + 8 0 - 16 1 AACGT +chr11 4860 4862 0 24 0 B G + 11 0 - 13 0 TCCGC +chr11 4869 4871 0 24 0 B G + 12 0 - 12 0 ACCGC +chr11 4872 4874 0 26 0 B G + 12 0 - 14 0 GCCGG +chr11 4894 4896 0 25 0 B G + 13 0 - 12 0 GACGC +chr11 4908 4910 0.0385 26 1 B G + 13 1 - 13 0 AGCGC +chr11 4923 4925 0 26 0 B G + 14 0 - 12 0 ATCGA +chr11 4942 4944 0 25 0 B G + 16 0 - 9 0 AGCGC +chr11 5009 5011 0.0476 21 1 B G + 15 0 - 6 1 GGCGC +chr11 5015 5017 0.0526 19 1 B G + 14 1 - 5 0 CTCGC +chr11 5025 5027 0.05 20 1 B G + 14 1 - 6 0 GGCGA +chr11 5036 5038 0.125 16 2 B G + 11 2 - 5 0 TGCGC +chr11 5047 5049 0 17 0 B G + 12 0 - 5 0 CTCGA +chr11 5051 5053 0 14 0 B G + 12 0 - 2 0 ACCGC +chr11 5053 5055 0 16 0 B G + 14 0 - 2 0 CGCGA +chr11 5097 5099 0 20 0 B G + 13 0 - 7 0 TCCGC +chr11 5099 5101 0 18 0 B G + 11 0 - 7 0 CGCGC +chr11 5104 5106 0 18 0 B G + 11 0 - 7 0 CTCGC +chr11 5106 5108 0.0588 17 1 B G + 10 1 - 7 0 CGCGC +chr11 5114 5116 0 18 0 B G + 11 0 - 7 0 CCCGG +chr11 5120 5122 0.0588 17 1 B G + 10 1 - 7 0 AACGA +chr11 5124 5126 0.0588 17 1 B G + 10 1 - 7 0 AGCGG +chr11 5140 5142 0.1 20 2 B G + 12 2 - 8 0 GCCGG +chr11 5144 5146 0.0556 18 1 B G + 10 1 - 8 0 GCCGG +chr11 5149 5151 0.0588 17 1 B G + 9 1 - 8 0 CCCGC +chr11 5151 5153 0.0625 16 1 B G + 9 1 - 7 0 CGCGA +chr11 5157 5159 0.0625 16 1 B G + 7 1 - 9 0 CCCGC +chr11 5159 5161 0.0588 17 1 B G + 8 0 - 9 1 CGCGC +chr11 5166 5168 0.143 14 2 B G + 8 1 - 6 1 CTCGG +chr11 5180 5182 0 18 0 B G + 9 0 - 9 0 GCCGG +chr11 5185 5187 0.0714 14 1 B G + 6 1 - 8 0 GCCGC +chr11 5190 5192 0.25 16 4 B G + 7 2 - 9 2 AGCGA +chr11 5197 5199 0.0667 15 1 B G + 6 1 - 9 0 AACGC +chr11 5209 5211 0.133 15 2 B G + 5 1 - 10 1 TGCGC +chr11 5211 5213 0.0588 17 1 B G + 7 1 - 10 0 CGCGC +chr11 5227 5229 0 18 0 B G + 7 0 - 11 0 CCCGC +chr11 5231 5233 0.0588 17 1 B G + 6 0 - 11 1 CCCGA +chr11 5245 5247 0 18 0 B G + 6 0 - 12 0 TGCGG +chr11 5282 5284 0 15 0 B G + 6 0 - 9 0 GCCGC +chr11 5285 5287 0 17 0 B G + 7 0 - 10 0 GCCGA +chr11 5291 5293 0.0556 18 1 B G + 7 0 - 11 1 GGCGA +chr11 5300 5302 0 21 0 B G + 8 0 - 13 0 ACCGG +chr11 5318 5320 0.136 22 3 B G + 8 2 - 14 1 TCCGG +chr11 5342 5344 0.0476 21 1 B G + 7 1 - 14 0 CCCGC +chr11 5351 5353 0.3 20 6 B G + 5 1 - 15 5 CTCGC +chr11 5379 5381 0.125 16 2 B G + 5 1 - 11 1 TACGC +chr11 5381 5383 0.0625 16 1 B G + 6 1 - 10 0 CGCGC +chr11 5394 5396 0.0667 15 1 B G + 6 1 - 9 0 CCCGG +chr11 5410 5412 0 14 0 B G + 5 0 - 9 0 GGCGA +chr11 5414 5416 0.0714 14 1 B G + 6 1 - 8 0 ACCGG +chr11 5417 5419 0 15 0 B G + 6 0 - 9 0 GGCGT +chr11 5472 5474 0 22 0 B G + 11 0 - 11 0 TTCGG +chr11 5498 5500 0.0435 23 1 B G + 13 1 - 10 0 CCCGG +chr11 5532 5534 0.0333 30 1 B G + 14 0 - 16 1 CCCGA +chr11 5535 5537 0.0323 31 1 B G + 16 1 - 15 0 GACGC +chr11 5538 5540 0.242 33 8 B G + 17 5 - 16 3 GCCGT +chr11 5551 5553 0.138 29 4 B G + 16 1 - 13 3 ACCGT +chr11 5564 5566 0.037 27 1 B G + 15 1 - 12 0 ACCGG +chr11 5576 5578 0.0357 28 1 B G + 16 1 - 12 0 TTCGC +chr11 5600 5602 0.08 25 2 B G + 14 2 - 11 0 GTCGG +chr11 5622 5624 0.0476 21 1 B G + 15 1 - 6 0 GCCGC +chr11 5624 5626 0.2 20 4 B G + 15 2 - 5 2 CGCGT +chr11 5641 5643 0 19 0 B G + 13 0 - 6 0 CACGA +chr11 5667 5669 0 16 0 B G + 12 0 - 4 0 CACGG +chr11 5720 5722 0 22 0 B G + 9 0 - 13 0 AGCGC +chr11 5816 5818 0 14 0 B G + 6 0 - 8 0 ACCGT +chr11 5828 5830 0 12 0 B G + 5 0 - 7 0 CCCGC +chr11 5830 5832 0 13 0 B G + 5 0 - 8 0 CGCGC +chr11 5843 5845 0.0909 11 1 B G + 3 0 - 8 1 AGCGA +chr11 5905 5907 0.333 3 1 B G + 1 0 - 2 1 CCCGT +chr11 5969 5971 0.3 10 3 B G + 8 2 - 2 1 CCCGC +chr11 5972 5974 0.0909 11 1 B G + 8 1 - 3 0 GCCGG +chr11 6023 6025 0.0909 11 1 B G + 7 0 - 4 1 CTCGC +chr11 6044 6046 0 10 0 B G + 6 0 - 4 0 TTCGC +chr11 6049 6051 0 10 0 B G + 6 0 - 4 0 CCCGC +chr11 6076 6078 0.0909 11 1 B G + 6 0 - 5 1 TCCGG +chr11 6089 6091 0 9 0 B G + 5 0 - 4 0 CCCGG +chr11 6099 6101 0 6 0 B G + 3 0 - 3 0 GGCGA +chr11 6148 6150 0 9 0 B G + 4 0 - 5 0 ACCGC +chr11 6156 6158 0 8 0 B G + 4 0 - 4 0 TTCGA +chr11 6164 6166 0 8 0 B G + 3 0 - 5 0 CTCGG +chr11 6168 6170 0.125 8 1 B G + 3 0 - 5 1 GGCGG +chr11 6208 6210 0.1 10 1 B G + 4 1 - 6 0 ATCGA +chr11 6226 6228 0 10 0 B G + 6 0 - 4 0 AACGC +chr11 6239 6241 0 5 0 B G + 3 0 - 2 0 CCCGG +chr11 6247 6249 0.0909 11 1 B G + 6 1 - 5 0 GCCGG +chr11 6251 6253 0.0769 13 1 B G + 7 0 - 6 1 GGCGC +chr11 6253 6255 0.0769 13 1 B G + 7 1 - 6 0 CGCGG +chr11 6258 6260 0 12 0 B G + 7 0 - 5 0 AGCGG +chr11 6269 6271 0 15 0 B G + 7 0 - 8 0 GCCGC +chr11 6272 6274 0.2 15 3 B G + 7 3 - 8 0 GCCGC +chr11 6282 6284 0.0667 15 1 B G + 7 0 - 8 1 CCCGG +chr11 6293 6295 0 16 0 B G + 8 0 - 8 0 GTCGG +chr11 6297 6299 0 18 0 B G + 10 0 - 8 0 GTCGG +chr11 6300 6302 0.133 15 2 B G + 8 2 - 7 0 GGCGG +chr11 6304 6306 0.118 17 2 B G + 10 2 - 7 0 GCCGG +chr11 6312 6314 0.05 20 1 B G + 11 1 - 9 0 AGCGC +chr11 6314 6316 0.05 20 1 B G + 10 1 - 10 0 CGCGG +chr11 6318 6320 0.05 20 1 B G + 10 1 - 10 0 GGCGT +chr11 6321 6323 0 19 0 B G + 9 0 - 10 0 GTCGC +chr11 6323 6325 0 20 0 B G + 11 0 - 9 0 CGCGA +chr11 6350 6352 0.0556 18 1 B G + 10 1 - 8 0 CTCGG +chr11 6356 6358 0.0526 19 1 B G + 10 1 - 9 0 TCCGC +chr11 6358 6360 0.05 20 1 B G + 11 0 - 9 1 CGCGC +chr11 6365 6367 0 19 0 B G + 11 0 - 8 0 CCCGA +chr11 6371 6373 0.0556 18 1 B G + 11 1 - 7 0 CCCGA +chr11 6430 6432 0 14 0 B G + 5 0 - 9 0 GCCGC +chr11 6432 6434 0.0625 16 1 B G + 6 1 - 10 0 CGCGG +chr11 6442 6444 0.1 20 2 B G + 9 2 - 11 0 CACGG +chr11 6449 6451 0 19 0 B G + 10 0 - 9 0 CTCGA +chr11 6491 6493 0.04 25 1 B G + 13 0 - 12 1 CTCGG +chr11 6526 6528 0.0286 35 1 B G + 15 0 - 20 1 ACCGA +chr11 6560 6562 0.24 25 6 B G + 7 2 - 18 4 TCCGT +chr11 6596 6598 0.421 38 16 B G + 12 3 - 26 13 GGCGA +chr11 6730 6732 0.366 41 15 B G + 15 7 - 26 8 AGCGA +chr11 6857 6859 0.212 33 7 B G + 16 2 - 17 5 CTCGG +chr11 6900 6902 0.862 29 25 B G + 14 12 - 15 13 TGCGC +chr11 6902 6904 0.483 29 14 B G + 15 6 - 14 8 CGCGC +chr11 6979 6981 0.28 25 7 B G + 14 3 - 11 4 TACGT +chr11 7085 7087 0.346 26 9 B G + 15 6 - 11 3 AGCGG +chr11 7166 7168 0.263 19 5 B G + 13 3 - 6 2 TTCGG +chr11 7336 7338 0.294 17 5 B G + 9 4 - 8 1 GCCGG +chr11 7583 7585 0.154 26 4 B G + 5 0 - 21 4 GGCGT +chr11 7633 7635 0.0952 21 2 B G + 2 0 - 19 2 CTCGC +chr11 7655 7657 0 15 0 B G + 2 0 - 13 0 TACGA +chr11 7673 7675 0 16 0 B G + 2 0 - 14 0 AGCGT +chr11 7679 7681 0 17 0 B G + 4 0 - 13 0 GTCGA +chr11 7688 7690 0 15 0 B G + 4 0 - 11 0 GCCGA +chr11 7695 7697 0.0667 15 1 B G + 4 0 - 11 1 GACGG +chr11 7729 7731 0 14 0 B G + 6 0 - 8 0 CTCGA +chr11 7748 7750 0 15 0 B G + 5 0 - 10 0 ACCGA +chr11 7825 7827 0 18 0 B G + 8 0 - 10 0 GACGC +chr11 7866 7868 0 17 0 B G + 10 0 - 7 0 CCCGA +chr11 7878 7880 0.0667 15 1 B G + 9 1 - 6 0 CCCGT +chr11 7882 7884 0.0769 13 1 B G + 8 1 - 5 0 TACGA +chr11 8027 8029 0.0385 26 1 B G + 22 1 - 4 0 AACGG +chr11 8033 8035 0.037 27 1 B G + 22 1 - 5 0 ACCGT +chr11 8303 8305 0.0556 36 2 B G + 9 1 - 27 1 ACCGA +chr11 8414 8416 0.0625 16 1 B G + 5 0 - 11 1 CCCGG +chr11 8583 8585 0.0833 24 2 B G + 16 2 - 8 0 CACGC +chr11 8678 8680 0 19 0 B G + 9 0 - 10 0 CTCGT +chr11 8692 8694 0.0435 23 1 B G + 10 0 - 13 1 TTCGA +chr11 8755 8757 0 26 0 B G + 9 0 - 17 0 CTCGC +chr11 8786 8788 0 25 0 B G + 12 0 - 13 0 AACGT +chr11 8812 8814 0.0909 22 2 B G + 10 2 - 12 0 CCCGG +chr11 8829 8831 0 20 0 B G + 11 0 - 9 0 ATCGA +chr11 8836 8838 0 21 0 B G + 11 0 - 10 0 CCCGG +chr11 8855 8857 0.0588 17 1 B G + 8 0 - 9 1 ACCGG +chr11 8902 8904 0 17 0 B G + 11 0 - 6 0 CCCGA +chr11 8914 8916 0.35 20 7 B G + 10 3 - 10 4 TACGG +chr11 8920 8922 0 22 0 B G + 12 0 - 10 0 CTCGC +chr11 8948 8950 0 33 0 B G + 12 0 - 21 0 AACGA +chr11 8975 8977 0.0476 42 2 B G + 12 0 - 30 2 GTCGC +chr11 9127 9129 0.0244 41 1 B G + 18 0 - 23 1 CTCGG +chr11 9136 9138 0.0476 42 2 B G + 18 1 - 24 1 CCCGC +chr11 9227 9229 0.0444 45 2 B G + 18 0 - 27 2 CACGC +chr11 9270 9272 0.025 40 1 B G + 15 0 - 25 1 ACCGC +chr11 9301 9303 0.175 40 7 B G + 19 3 - 21 4 CTCGC +chr11 9371 9373 0 25 0 B G + 16 0 - 9 0 TTCGA +chr11 9380 9382 0.04 25 1 B G + 16 1 - 9 0 AACGT +chr11 9447 9449 0 17 0 B G + 13 0 - 4 0 CACGT +chr11 9478 9480 0 16 0 B G + 11 0 - 5 0 ATCGC +chr11 9510 9512 0 14 0 B G + 7 0 - 7 0 CTCGA +chr11 9588 9590 0 20 0 B G + 14 0 - 6 0 GGCGC +chr11 9677 9679 0.0909 11 1 B G + 7 0 - 4 1 ATCGA +chr11 9697 9699 0 14 0 B G + 10 0 - 4 0 TCCGA +chr11 9709 9711 0 11 0 B G + 7 0 - 4 0 GCCGG +chr11 9729 9731 0.167 6 1 B G + 5 1 - 1 0 GACGA
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/SE_g2.G.bed Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,310 @@ +#chrom start end ratio totalC methC strand next Plus totalC methC Minus totalC methC localSeq +chr11 41 43 0 3 0 - G + 0 0 - 3 0 GCGGC +chr11 48 50 0 3 0 - G + 0 0 - 3 0 CCGGC +chr11 56 58 0 4 0 - G + 0 0 - 4 0 CCGCC +chr11 59 61 0.4 5 2 B G + 1 1 - 4 1 GCCGT +chr11 101 103 0.143 7 1 B G + 2 0 - 5 1 GTCGC +chr11 140 142 0 9 0 B G + 4 0 - 5 0 GGCGA +chr11 144 146 0.1 10 1 B G + 3 1 - 7 0 AACGG +chr11 210 212 0.417 12 5 B G + 3 2 - 9 3 CCCGA +chr11 215 217 0.25 16 4 B G + 3 2 - 13 2 CTCGC +chr11 316 318 0.846 26 22 B G + 5 4 - 21 18 CTCGC +chr11 331 333 0.808 26 21 B G + 3 2 - 23 19 TGCGT +chr11 400 402 0.412 34 14 B G + 5 3 - 29 11 CACGC +chr11 407 409 0.588 34 20 B G + 6 5 - 28 15 CTCGT +chr11 445 447 0.606 33 20 B G + 9 6 - 24 14 CACGC +chr11 469 471 0.588 34 20 B G + 9 5 - 25 15 ACCGC +chr11 546 548 0.812 32 26 B G + 16 10 - 16 16 GTCGA +chr11 666 668 0.553 38 21 B G + 22 13 - 16 8 TGCGT +chr11 694 696 0.902 41 37 B G + 29 27 - 12 10 TGCGT +chr11 712 714 0.881 42 37 B G + 23 20 - 19 17 ACCGA +chr11 721 723 0.923 39 36 B G + 20 20 - 19 16 CCCGG +chr11 737 739 0.622 37 23 B G + 21 13 - 16 10 GGCGG +chr11 753 755 0.78 41 32 B G + 20 19 - 21 13 TCCGG +chr11 762 764 0.619 42 26 B G + 21 16 - 21 10 CCCGT +chr11 792 794 0.842 38 32 B G + 15 11 - 23 21 GCCGT +chr11 798 800 0.875 40 35 B G + 16 13 - 24 22 TGCGC +chr11 816 818 0.912 34 31 B G + 15 13 - 19 18 TTCGC +chr11 830 832 0.914 35 32 B G + 17 15 - 18 17 TGCGA +chr11 954 956 0.485 33 16 B G + 15 8 - 18 8 CCCGT +chr11 977 979 0.703 37 26 B G + 21 16 - 16 10 CCCGG +chr11 1006 1008 0.526 38 20 B G + 21 13 - 17 7 ACCGT +chr11 1066 1068 0.756 45 34 B G + 29 21 - 16 13 GGCGG +chr11 1116 1118 0.771 35 27 B G + 24 19 - 11 8 CACGG +chr11 1145 1147 0.538 26 14 B G + 15 10 - 11 4 CCCGA +chr11 1260 1262 0.375 24 9 B G + 12 5 - 12 4 GACGA +chr11 1320 1322 0.64 25 16 B G + 13 11 - 12 5 TCCGC +chr11 1559 1561 0.852 27 23 B G + 15 13 - 12 10 TACGC +chr11 1574 1576 0.607 28 17 B G + 14 9 - 14 8 ATCGT +chr11 1592 1594 0.697 33 23 B G + 14 7 - 19 16 CTCGG +chr11 1609 1611 0.244 41 10 B G + 18 5 - 23 5 CTCGG +chr11 1632 1634 0.2 45 9 B G + 20 5 - 25 4 GACGG +chr11 1642 1644 0.268 41 11 B G + 18 6 - 23 5 CCCGC +chr11 1680 1682 0.611 54 33 B G + 20 12 - 34 21 GTCGC +chr11 1689 1691 0.471 51 24 B G + 20 8 - 31 16 CTCGG +chr11 1703 1705 0.755 49 37 B G + 17 12 - 32 25 ACCGA +chr11 1733 1735 0.745 51 38 B G + 20 15 - 31 23 CTCGT +chr11 1766 1768 0.312 48 15 B G + 19 4 - 29 11 TCCGT +chr11 1869 1871 0.263 38 10 B G + 21 5 - 17 5 TACGT +chr11 2040 2042 0 34 0 B G + 16 0 - 18 0 AACGA +chr11 2104 2106 0.0513 39 2 B G + 15 0 - 24 2 AACGA +chr11 2148 2150 0.588 34 20 B G + 12 3 - 22 17 GGCGT +chr11 2360 2362 0.538 26 14 B G + 22 11 - 4 3 GCCGG +chr11 2384 2386 0.593 27 16 B G + 21 11 - 6 5 TACGG +chr11 2454 2456 0.107 28 3 B G + 23 2 - 5 1 TCCGC +chr11 2621 2623 0 12 0 B G + 11 0 - 1 0 ATCGT +chr11 2648 2650 0 20 0 B G + 17 0 - 3 0 GGCGT +chr11 2665 2667 0.105 19 2 B G + 16 0 - 3 2 GCCGC +chr11 2667 2669 0.1 20 2 B G + 17 0 - 3 2 CGCGG +chr11 2673 2675 0.19 21 4 B G + 18 2 - 3 2 GGCGG +chr11 2676 2678 0.0385 26 1 B G + 23 1 - 3 0 GGCGA +chr11 2685 2687 0.143 28 4 B G + 25 2 - 3 2 GGCGG +chr11 2688 2690 0 28 0 B G + 24 0 - 4 0 GGCGC +chr11 2691 2693 0.276 29 8 B G + 24 5 - 5 3 GCCGG +chr11 2713 2715 0.154 26 4 B G + 20 3 - 6 1 TTCGG +chr11 2723 2725 0.12 25 3 B G + 20 3 - 5 0 GTCGC +chr11 2727 2729 0.35 20 7 B G + 16 6 - 4 1 CACGG +chr11 2731 2733 0.211 19 4 B G + 15 3 - 4 1 GCCGG +chr11 2738 2740 0.273 22 6 B G + 18 4 - 4 2 CCCGC +chr11 2767 2769 0.333 21 7 B G + 14 5 - 7 2 GCCGG +chr11 2778 2780 0.455 22 10 B G + 14 5 - 8 5 TCCGG +chr11 2788 2790 0.167 18 3 B G + 14 3 - 4 0 GCCGC +chr11 2792 2794 0.318 22 7 B G + 16 4 - 6 3 CCCGT +chr11 2810 2812 0.105 19 2 B G + 14 1 - 5 1 ACCGA +chr11 2825 2827 0.133 15 2 B G + 11 2 - 4 0 TCCGC +chr11 3031 3033 0.4 15 6 B G + 11 4 - 4 2 CTCGG +chr11 3034 3036 0.286 14 4 B G + 10 2 - 4 2 GGCGG +chr11 3052 3054 0.769 13 10 B G + 7 5 - 6 5 ATCGA +chr11 3095 3097 0.8 10 8 B G + 5 5 - 5 3 ATCGG +chr11 3117 3119 0.571 14 8 B G + 4 2 - 10 6 ACCGT +chr11 3273 3275 0.48 25 12 B G + 9 3 - 16 9 AGCGC +chr11 3283 3285 0.478 23 11 B G + 9 2 - 14 9 ACCGG +chr11 3323 3325 0.625 24 15 B G + 10 6 - 14 9 ACCGC +chr11 3424 3426 0.0952 21 2 B G + 12 1 - 9 1 GACGC +chr11 3452 3454 0.588 17 10 B G + 14 9 - 3 1 ACCGT +chr11 3484 3486 0.556 18 10 B G + 14 7 - 4 3 ATCGA +chr11 3578 3580 0.737 19 14 B G + 12 8 - 7 6 TCCGC +chr11 3595 3597 0.238 21 5 B G + 14 3 - 7 2 GACGT +chr11 3611 3613 0.826 23 19 B G + 16 12 - 7 7 CCCGG +chr11 3617 3619 0.762 21 16 B G + 13 9 - 8 7 CTCGG +chr11 3639 3641 0.6 20 12 B G + 10 6 - 10 6 TCCGG +chr11 3646 3648 0.391 23 9 B G + 10 6 - 13 3 ACCGC +chr11 3665 3667 0.571 21 12 B G + 10 7 - 11 5 GCCGG +chr11 3672 3674 0.348 23 8 B G + 10 6 - 13 2 GTCGG +chr11 3677 3679 0.261 23 6 B G + 10 3 - 13 3 TTCGC +chr11 3693 3695 0.231 26 6 B G + 10 2 - 16 4 CTCGC +chr11 3704 3706 0.2 25 5 B G + 9 1 - 16 4 TCCGC +chr11 3707 3709 0.16 25 4 B G + 9 1 - 16 3 GCCGC +chr11 3717 3719 0.286 21 6 B G + 7 2 - 14 4 TCCGC +chr11 3960 3962 0.167 18 3 B G + 7 2 - 11 1 CCCGA +chr11 3991 3993 0.167 24 4 B G + 9 4 - 15 0 GACGT +chr11 4056 4058 0.292 24 7 B G + 13 4 - 11 3 GACGC +chr11 4163 4165 0.0333 30 1 B G + 17 0 - 13 1 CACGT +chr11 4195 4197 0.231 26 6 B G + 16 4 - 10 2 GGCGG +chr11 4202 4204 0.0667 30 2 B G + 19 1 - 11 1 GTCGC +chr11 4207 4209 0.194 31 6 B G + 19 4 - 12 2 TCCGG +chr11 4243 4245 0.111 27 3 B G + 17 2 - 10 1 GTCGG +chr11 4248 4250 0.0323 31 1 B G + 19 1 - 12 0 GGCGC +chr11 4284 4286 0.226 31 7 B G + 17 5 - 14 2 TCCGC +chr11 4289 4291 0.0741 27 2 B G + 14 1 - 13 1 TCCGG +chr11 4302 4304 0 30 0 B G + 16 0 - 14 0 ATCGT +chr11 4307 4309 0.0294 34 1 B G + 20 0 - 14 1 CACGA +chr11 4314 4316 0.0606 33 2 B G + 19 2 - 14 0 AACGG +chr11 4320 4322 0.0882 34 3 B G + 20 1 - 14 2 ACCGT +chr11 4330 4332 0.0278 36 1 B G + 21 0 - 15 1 AACGA +chr11 4340 4342 0.0323 31 1 B G + 18 1 - 13 0 TCCGT +chr11 4365 4367 0.0303 33 1 B G + 19 1 - 14 0 GACGA +chr11 4393 4395 0.143 28 4 B G + 15 2 - 13 2 TTCGA +chr11 4403 4405 0 25 0 B G + 11 0 - 14 0 GCCGC +chr11 4405 4407 0 24 0 B G + 10 0 - 14 0 CGCGT +chr11 4420 4422 0.136 22 3 B G + 8 1 - 14 2 GCCGA +chr11 4456 4458 0 15 0 B G + 2 0 - 13 0 GGCGC +chr11 4458 4460 0.0625 16 1 B G + 3 0 - 13 1 CGCGG +chr11 4469 4471 0.154 13 2 B G + 2 0 - 11 2 GCCGG +chr11 4482 4484 0 19 0 B G + 5 0 - 14 0 CTCGA +chr11 4499 4501 0.0417 24 1 B G + 9 0 - 15 1 GGCGT +chr11 4519 4521 0.304 23 7 B G + 9 2 - 14 5 TCCGG +chr11 4523 4525 0.28 25 7 B G + 11 3 - 14 4 GCCGG +chr11 4532 4534 0.174 23 4 B G + 10 0 - 13 4 AGCGC +chr11 4549 4551 0.231 26 6 B G + 9 3 - 17 3 TGCGG +chr11 4558 4560 0.2 25 5 B G + 8 1 - 17 4 ACCGC +chr11 4588 4590 0 15 0 B G + 5 0 - 10 0 CACGT +chr11 4594 4596 0.0556 18 1 B G + 5 0 - 13 1 TCCGG +chr11 4633 4635 0.263 19 5 B G + 4 0 - 15 5 TTCGC +chr11 4692 4694 0.188 16 3 B G + 4 1 - 12 2 CCCGG +chr11 4723 4725 0.235 17 4 B G + 7 0 - 10 4 ACCGA +chr11 4744 4746 0.0952 21 2 B G + 8 1 - 13 1 TTCGG +chr11 4756 4758 0.208 24 5 B G + 7 3 - 17 2 CACGG +chr11 4785 4787 0.182 22 4 B G + 5 0 - 17 4 GGCGG +chr11 4789 4791 0.0833 24 2 B G + 7 1 - 17 1 GGCGC +chr11 4791 4793 0.261 23 6 B G + 7 2 - 16 4 CGCGT +chr11 4799 4801 0 25 0 B G + 10 0 - 15 0 GCCGC +chr11 4845 4847 0 23 0 B G + 10 0 - 13 0 AACGT +chr11 4860 4862 0 17 0 B G + 9 0 - 8 0 TCCGC +chr11 4869 4871 0.238 21 5 B G + 11 4 - 10 1 ACCGC +chr11 4872 4874 0.1 20 2 B G + 10 0 - 10 2 GCCGG +chr11 4894 4896 0.0833 24 2 B G + 13 2 - 11 0 GACGC +chr11 4908 4910 0.0741 27 2 B G + 15 2 - 12 0 AGCGC +chr11 4923 4925 0 28 0 B G + 17 0 - 11 0 ATCGA +chr11 4942 4944 0.136 22 3 B G + 12 1 - 10 2 AGCGC +chr11 5009 5011 0.08 25 2 B G + 11 1 - 14 1 GGCGC +chr11 5015 5017 0.107 28 3 B G + 13 1 - 15 2 CTCGC +chr11 5025 5027 0.192 26 5 B G + 12 3 - 14 2 GGCGA +chr11 5036 5038 0.04 25 1 B G + 12 0 - 13 1 TGCGC +chr11 5047 5049 0 22 0 B G + 11 0 - 11 0 CTCGA +chr11 5051 5053 0.0476 21 1 B G + 11 1 - 10 0 ACCGC +chr11 5053 5055 0 21 0 B G + 11 0 - 10 0 CGCGA +chr11 5097 5099 0 24 0 B G + 13 0 - 11 0 TCCGC +chr11 5099 5101 0.04 25 1 B G + 14 0 - 11 1 CGCGC +chr11 5104 5106 0.0435 23 1 B G + 13 1 - 10 0 CTCGC +chr11 5106 5108 0 22 0 B G + 13 0 - 9 0 CGCGC +chr11 5114 5116 0 19 0 B G + 11 0 - 8 0 CCCGG +chr11 5120 5122 0.1 20 2 B G + 12 2 - 8 0 AACGA +chr11 5124 5126 0 18 0 B G + 10 0 - 8 0 AGCGG +chr11 5140 5142 0.0526 19 1 B G + 11 1 - 8 0 GCCGG +chr11 5144 5146 0 18 0 B G + 11 0 - 7 0 GCCGG +chr11 5149 5151 0 16 0 B G + 10 0 - 6 0 CCCGC +chr11 5151 5153 0 15 0 B G + 9 0 - 6 0 CGCGA +chr11 5157 5159 0.133 15 2 B G + 10 0 - 5 2 CCCGC +chr11 5159 5161 0.0667 15 1 B G + 8 0 - 7 1 CGCGC +chr11 5166 5168 0 16 0 B G + 8 0 - 8 0 CTCGG +chr11 5180 5182 0.0769 13 1 B G + 8 0 - 5 1 GCCGG +chr11 5185 5187 0 12 0 B G + 7 0 - 5 0 GCCGC +chr11 5190 5192 0 10 0 B G + 6 0 - 4 0 AGCGA +chr11 5197 5199 0 10 0 B G + 5 0 - 5 0 AACGC +chr11 5209 5211 0.111 9 1 B G + 5 0 - 4 1 TGCGC +chr11 5211 5213 0 9 0 B G + 6 0 - 3 0 CGCGC +chr11 5227 5229 0.111 9 1 B G + 6 1 - 3 0 CCCGC +chr11 5231 5233 0.0909 11 1 B G + 7 0 - 4 1 CCCGA +chr11 5245 5247 0 13 0 B G + 7 0 - 6 0 TGCGG +chr11 5282 5284 0 12 0 B G + 4 0 - 8 0 GCCGC +chr11 5285 5287 0.167 12 2 B G + 4 1 - 8 1 GCCGA +chr11 5291 5293 0.0769 13 1 B G + 4 0 - 9 1 GGCGA +chr11 5300 5302 0 13 0 B G + 4 0 - 9 0 ACCGG +chr11 5318 5320 0.364 11 4 B G + 2 0 - 9 4 TCCGG +chr11 5342 5344 0.167 12 2 B G + 3 0 - 9 2 CCCGC +chr11 5351 5353 0.429 14 6 B G + 4 0 - 10 6 CTCGC +chr11 5379 5381 0 16 0 B G + 6 0 - 10 0 TACGC +chr11 5381 5383 0 16 0 B G + 6 0 - 10 0 CGCGC +chr11 5394 5396 0.0667 15 1 B G + 6 0 - 9 1 CCCGG +chr11 5410 5412 0 21 0 B G + 10 0 - 11 0 GGCGA +chr11 5414 5416 0.143 21 3 B G + 10 2 - 11 1 ACCGG +chr11 5417 5419 0 20 0 B G + 9 0 - 11 0 GGCGT +chr11 5472 5474 0.174 23 4 B G + 13 4 - 10 0 TTCGG +chr11 5498 5500 0.143 21 3 B G + 12 3 - 9 0 CCCGG +chr11 5532 5534 0.115 26 3 B G + 16 2 - 10 1 CCCGA +chr11 5535 5537 0.231 26 6 B G + 17 6 - 9 0 GACGC +chr11 5538 5540 0.308 26 8 B G + 17 7 - 9 1 GCCGT +chr11 5551 5553 0.348 23 8 B G + 14 5 - 9 3 ACCGT +chr11 5564 5566 0 19 0 B G + 12 0 - 7 0 ACCGG +chr11 5576 5578 0.0476 21 1 B G + 15 0 - 6 1 TTCGC +chr11 5600 5602 0.0833 24 2 B G + 18 1 - 6 1 GTCGG +chr11 5622 5624 0.211 19 4 B G + 15 1 - 4 3 GCCGC +chr11 5624 5626 0.235 17 4 B G + 13 4 - 4 0 CGCGT +chr11 5641 5643 0.0588 17 1 B G + 16 1 - 1 0 CACGA +chr11 5667 5669 0.0417 24 1 B G + 22 1 - 2 0 CACGG +chr11 5720 5722 0.125 24 3 B G + 20 2 - 4 1 AGCGC +chr11 5816 5818 0.238 21 5 B G + 11 5 - 10 0 ACCGT +chr11 5828 5830 0.238 21 5 B G + 11 4 - 10 1 CCCGC +chr11 5830 5832 0.0455 22 1 B G + 11 0 - 11 1 CGCGC +chr11 5843 5845 0.0556 18 1 B G + 8 1 - 10 0 AGCGA +chr11 5905 5907 0 2 0 B G + 1 0 - 1 0 CCCGT +chr11 5969 5971 0.267 15 4 B G + 7 2 - 8 2 CCCGC +chr11 5972 5974 0 15 0 B G + 7 0 - 8 0 GCCGG +chr11 6023 6025 0.333 18 6 B G + 8 1 - 10 5 CTCGC +chr11 6044 6046 0 12 0 B G + 6 0 - 6 0 TTCGC +chr11 6049 6051 0.0833 12 1 B G + 6 1 - 6 0 CCCGC +chr11 6076 6078 0 7 0 B G + 1 0 - 6 0 TCCGG +chr11 6089 6091 0 10 0 B G + 3 0 - 7 0 CCCGG +chr11 6099 6101 0.111 9 1 B G + 3 0 - 6 1 GGCGA +chr11 6148 6150 0 13 0 B G + 5 0 - 8 0 ACCGC +chr11 6156 6158 0 14 0 B G + 6 0 - 8 0 TTCGA +chr11 6164 6166 0 12 0 B G + 7 0 - 5 0 CTCGG +chr11 6168 6170 0 14 0 B G + 7 0 - 7 0 GGCGG +chr11 6208 6210 0.2 10 2 B G + 6 1 - 4 1 ATCGA +chr11 6226 6228 0 10 0 B G + 6 0 - 4 0 AACGC +chr11 6239 6241 0 12 0 B G + 7 0 - 5 0 CCCGG +chr11 6247 6249 0.0909 11 1 B G + 6 1 - 5 0 GCCGG +chr11 6251 6253 0.222 9 2 B G + 4 1 - 5 1 GGCGC +chr11 6253 6255 0.111 9 1 B G + 4 0 - 5 1 CGCGG +chr11 6258 6260 0.0909 11 1 B G + 5 0 - 6 1 AGCGG +chr11 6269 6271 0.0833 12 1 B G + 5 0 - 7 1 GCCGC +chr11 6272 6274 0.0909 11 1 B G + 4 0 - 7 1 GCCGC +chr11 6282 6284 0.1 10 1 B G + 5 0 - 5 1 CCCGG +chr11 6293 6295 0.143 14 2 B G + 6 2 - 8 0 GTCGG +chr11 6297 6299 0 13 0 B G + 6 0 - 7 0 GTCGG +chr11 6300 6302 0.154 13 2 B G + 6 1 - 7 1 GGCGG +chr11 6304 6306 0.0833 12 1 B G + 5 1 - 7 0 GCCGG +chr11 6312 6314 0 12 0 B G + 5 0 - 7 0 AGCGC +chr11 6314 6316 0.167 12 2 B G + 5 1 - 7 1 CGCGG +chr11 6318 6320 0 12 0 B G + 5 0 - 7 0 GGCGT +chr11 6321 6323 0 13 0 B G + 5 0 - 8 0 GTCGC +chr11 6323 6325 0 12 0 B G + 5 0 - 7 0 CGCGA +chr11 6350 6352 0 12 0 B G + 5 0 - 7 0 CTCGG +chr11 6356 6358 0.1 10 1 B G + 5 1 - 5 0 TCCGC +chr11 6358 6360 0 11 0 B G + 5 0 - 6 0 CGCGC +chr11 6365 6367 0 11 0 B G + 6 0 - 5 0 CCCGA +chr11 6371 6373 0.0769 13 1 B G + 6 1 - 7 0 CCCGA +chr11 6430 6432 0.105 19 2 B G + 11 0 - 8 2 GCCGC +chr11 6432 6434 0.105 19 2 B G + 10 0 - 9 2 CGCGG +chr11 6442 6444 0.0909 22 2 B G + 12 0 - 10 2 CACGG +chr11 6449 6451 0.0417 24 1 B G + 14 1 - 10 0 CTCGA +chr11 6491 6493 0.278 18 5 B G + 10 2 - 8 3 CTCGG +chr11 6526 6528 0.115 26 3 B G + 12 2 - 14 1 ACCGA +chr11 6560 6562 0.233 30 7 B G + 15 1 - 15 6 TCCGT +chr11 6596 6598 0.6 30 18 B G + 14 7 - 16 11 GGCGA +chr11 6730 6732 0.516 31 16 B G + 9 5 - 22 11 AGCGA +chr11 6857 6859 0.239 46 11 B G + 20 6 - 26 5 CTCGG +chr11 6900 6902 0.804 46 37 B G + 22 19 - 24 18 TGCGC +chr11 6902 6904 0.804 46 37 B G + 22 18 - 24 19 CGCGC +chr11 6979 6981 0.487 39 19 B G + 20 11 - 19 8 TACGT +chr11 7085 7087 0.704 27 19 B G + 14 10 - 13 9 AGCGG +chr11 7166 7168 0.259 27 7 B G + 19 7 - 8 0 TTCGG +chr11 7336 7338 0.769 13 10 B G + 11 9 - 2 1 GCCGG +chr11 7583 7585 0.176 34 6 B G + 7 1 - 27 5 GGCGT +chr11 7633 7635 0.154 26 4 B G + 7 3 - 19 1 CTCGC +chr11 7655 7657 0.143 21 3 B G + 6 0 - 15 3 TACGA +chr11 7673 7675 0 17 0 B G + 4 0 - 13 0 AGCGT +chr11 7679 7681 0.0476 21 1 B G + 7 0 - 14 1 GTCGA +chr11 7688 7690 0.167 18 3 B G + 8 0 - 10 3 GCCGA +chr11 7695 7697 0 21 0 B G + 7 0 - 14 0 GACGG +chr11 7729 7731 0.19 21 4 B G + 7 1 - 14 3 CTCGA +chr11 7748 7750 0.0435 23 1 B G + 8 0 - 15 1 ACCGA +chr11 7825 7827 0.05 20 1 B G + 11 0 - 9 1 GACGC +chr11 7866 7868 0.0455 22 1 B G + 12 0 - 10 1 CCCGA +chr11 7878 7880 0.0952 21 2 B G + 13 1 - 8 1 CCCGT +chr11 7882 7884 0.3 20 6 B G + 12 5 - 8 1 TACGA +chr11 8027 8029 0.167 18 3 B G + 13 2 - 5 1 AACGG +chr11 8033 8035 0.0625 16 1 B G + 11 1 - 5 0 ACCGT +chr11 8303 8305 0.0435 23 1 B G + 10 0 - 13 1 ACCGA +chr11 8414 8416 0.444 27 12 B G + 11 4 - 16 8 CCCGG +chr11 8583 8585 0.148 27 4 B G + 11 1 - 16 3 CACGC +chr11 8678 8680 0 17 0 B G + 8 0 - 9 0 CTCGT +chr11 8692 8694 0.0526 19 1 B G + 8 0 - 11 1 TTCGA +chr11 8755 8757 0.0417 24 1 B G + 3 0 - 21 1 CTCGC +chr11 8786 8788 0 19 0 B G + 1 0 - 18 0 AACGT +chr11 8812 8814 0 21 0 B G + 4 0 - 17 0 CCCGG +chr11 8829 8831 0.136 22 3 B G + 5 0 - 17 3 ATCGA +chr11 8836 8838 0.0476 21 1 B G + 4 0 - 17 1 CCCGG +chr11 8855 8857 0.0909 22 2 B G + 6 1 - 16 1 ACCGG +chr11 8902 8904 0.333 15 5 B G + 4 0 - 11 5 CCCGA +chr11 8914 8916 0.308 13 4 B G + 3 2 - 10 2 TACGG +chr11 8920 8922 0 12 0 B G + 4 0 - 8 0 CTCGC +chr11 8948 8950 0.0588 17 1 B G + 4 0 - 13 1 AACGA +chr11 8975 8977 0 19 0 B G + 4 0 - 15 0 GTCGC +chr11 9127 9129 0.0968 31 3 B G + 13 1 - 18 2 CTCGG +chr11 9136 9138 0.0606 33 2 B G + 15 1 - 18 1 CCCGC +chr11 9227 9229 0.0526 38 2 B G + 17 2 - 21 0 CACGC +chr11 9270 9272 0.0909 33 3 B G + 16 2 - 17 1 ACCGC +chr11 9301 9303 0.0303 33 1 B G + 15 1 - 18 0 CTCGC +chr11 9371 9373 0 32 0 B G + 21 0 - 11 0 TTCGA +chr11 9380 9382 0 31 0 B G + 22 0 - 9 0 AACGT +chr11 9447 9449 0 30 0 B G + 25 0 - 5 0 CACGT +chr11 9478 9480 0.0476 21 1 B G + 15 0 - 6 1 ATCGC +chr11 9510 9512 0.0435 23 1 B G + 14 1 - 9 0 CTCGA +chr11 9588 9590 0.111 18 2 B G + 11 1 - 7 1 GGCGC +chr11 9677 9679 0.231 13 3 + G + 13 3 - 0 0 ATCGA +chr11 9697 9699 0.2 15 3 B G + 14 3 - 1 0 TCCGA +chr11 9709 9711 0.111 18 2 B G + 16 2 - 2 0 GCCGG +chr11 9729 9731 0 16 0 B G + 14 0 - 2 0 GACGA +chr11 9799 9801 0 7 0 B G + 4 0 - 3 0 TTCGG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/all_fasta.loc Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,1 @@ +chr11 chr11 chr11 ${__HERE__}/chr11.fa
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chr11.fa Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,601 @@ +>chr11 +CCTGGGGTGTTTCAGGTCCCATCTCTCCTCCCAGACCAGAGCGGCTCCCG +GCATCCCGCCGTCCTGCTCACAGTATCTTCACCTCACCACTTCCACATAG +TCGCCACCCACAGAGAGTGAGAAAGTGGGACCCAGAGGGGCGAACGGGGG +AGGGGCAAGGATAGTGGGGTGGTTTTAGTTGGGAGACCACCACTTCCAAT +GCCCCATCCCCGACTCGCCCTGCATCTCCCTGCTCACCTTTTCATGTGCA +CCCTACTCATAGTCACATAATTTGTCAATTACAGCAAAAAGCAACAGGAT +ACAATTATGTTAACCTCGCAGTCTGTCAGTGCGTTATCTTGTCACACTTC +TACAAGGGGGCTCTCCCTGCATTCTAATGTCAAATTTGAATAGTGCACCA +CGCAGCTCGTTCTTATGCACACAGTGCTGCCCACAAACACACACACGCAC +CCACCAGCCACCTTCATACCGCTCCTGACATACACAACCCTCACATTCCC +AGGCCAACAAAATGGTTCAACAAACACCACCTACATACAATGTGGTCGAT +GTGTCCCAGGCCTTCAAATGCAGTCTCACCCATGACATTCCCCAAGCATG +GAAGCCCTGAGAGGAAATGGTTGGGAGAGTAGGGGACAGGCAAAGGGATG +CACATATGGAGAGCTGCGTGGATGGCTGCTTGGGTTTTACCTTGCGTAGG +TTGCCCTGGCACCGAAGTCCCCGGATACCAACCAGGGCGGGTGCCCCAGC +TTCCGGTCTGCCCGTTCAACATCCTTAGTTTATCATACATGCCGTCTGCG +CCCATCTGTTGCTTTTCGCTAGCCAGGTTGCGAAGAACTCTGTTTATTGA +TGACACCTGCAAATCAAACCAAAATCAAACCAAATGGTAGTGTCTCCTGA +AGACACAGTCACCCATCTCAGCTCACCCACAACCTTAAAAAGCAACTCTC +AACCCGTTAAAAAGCTCCCAGCCACCCCGGGACAGTGGGTGGATTTGCAG +ATACACCGTGGAAAAAATGATAGCTATCACTTTGGGCATGGAAATTTAGT +TGGATAGAGAATTGGGCGGAGGGGGTCCTTCACCATTGCTTGGTGTCTCT +GGTGACCTAACTCACACGGTTGCTTTGCTTTGTTAAAAGACTGCCCGAAA +ATAAAAACTATTTAGACTTGTTGTAAAGCTTTCTTTCATTATATTGTTTA +ATATTAGGATGGAAATGGATGTGTGACACCTGAAGGAAAGTTCTGGCAGG +TGGATTAGGACGAAGTTACAATCTGGTTCTCATTTTCCTTCTTCATTCAA +GTGCCTTTCCCTGGTGCCTCCGCCCTCTGTTTTGCAGCATGCAAATGAAG +TGAATGACTCCCCACACTTGACTCCCATTTTCCAGACAGTCAAAGAAAAG +TCAGGGCATTCCTCTCTGTTCCCCCAGGTACAAAGGAGACAAATGTGGAG +CAGGGAGAGGACACAGACTAAGAGACAGTGGAGAGAGAGGGTGGGAGGAG +GTAAAGAGGAGAGAGCATTGGGCTTAGGGCAGGGAGGGCAGATGTTCTCA +ATGAACTTACGCTTGGTATGTTATCGTTGGTACAGACCCCCTCGGACAGT +AATCTGTCTCGGATTTCCCAAGCAAAGATGGACGGGCACTCCCGCTTATA +CTGGGCTATTTTGCTTACAACTTCTGGAGTCGCTACTCTCGGTTTACTAC +CACCGATTGCCCTGGGTCTGATGGAGCCAGTCTCGTAATACCTGCCCAGA +ATTTTACTCACACATCCGTTGGACACCTGCATAGGGGAAGTGGACAGAAA +ACCACATTATTAATAATTTCAAGACAAAAATAAAATTGTTTAAGTATGCA +TTAAACAATGACAAGCTTACGTTTTGATTGTCCAGCACTTGGACTTTTGC +ATCTGCATGGGTCTATAACACAAAAATATACCTTCAATGGTATGAGAACT +TACTGTAGAGAGCTTTTTTTCTTAAAATTACATTTGTAGCCCTAAAAACT +ACAAATATGATGATACTTTCAAACAATTTGAACTAAAAAACGAATTTAAA +AGCTTTTTTTAAAAAAAAAACTTTTCTTAAACACTGCCTGAAGATGCATC +AAAACGAAGTAGATAAATTTATTTTTGTGCTGACCTTGCTTAAAGTGGCG +TTATGTTTTAAAGAACAAAGGTAAAAAATAAACTGATTTTTTTACTTCTT +CTTCTTTAAAAAATACTCAATTGAGTAAATGTGAGTTAGGGAGGAGTAAA +TAGCATTTGCCTTTTAAAATCAATATATATTATTCATAAACATGAAGAAT +AAACAAATACCTCAAAAGCTGAGGTAAGCATGGGCTGGGGAGAGCAGAAT +GAAATTATGCCGGTTTATATAACTCAGCTTATTACGGTTCATAAACTGTT +CCCACAATGAATGTCTTTACCAAATAAAAAGAGAAAGATTTTTTTAAAAA +AATCCGCACACAATATTTTTCTGAAGCAGATGAGTTATCTTATGTAACTG +ACCCAGGTTGAAAGAGATAGGGAAGGATGGTGGAAGGAGAGGGGAAAGTG +GGAAGGCAGGGGAGTGGGTGGGGGGACTGGGGACTGGGGTGGGTGAGGGT +GGGGGGGTCCATAATTAGCATCGTTTACAGTAAGAAATGAAGAGAGGGCG +TTGAGAGTGGAGGGCCGCGGGGGCGGCGAGTGGGGCGGCGCCGGGAGGAT +CACCTGCAGAATTCGGGAAATGTCGCACGGCCGGGCCCCGCTGTGAGCTA +GCTCTACAATCTTCTGCCGGGTGGAGTCCGGCAGTGGCCGCCCGTTGACA +AAGACACCACCGAGCTGATTCACTCCGCTGTGACCTGAGGAAAGGGAGAG +GAGAGGAAAGGGGAAAAGAAGAGAAGAGAGCAGAGTGAAGAGGAAGAAGA +GGGAGAAGAAGGAAGAGGAAGATGAGGGAGAACAAGAACAGAAAGGAGAG +GAGGAAGGGGAAGAGGAAGAAGGAGAGGAGGAGGAGACAACCACAATGCA +TCCTCATCCCCCTGCCAACCTGTGCCAACCTCGGCGGTCAGTTCCCTGCT +ATCGATCAAATAAAGGACAACAGGACCACCAGCCATGCCAGACATCGGGC +AGCCCAGTCCAAGCAACCGTGCCCCTGCCCACTGTACTGCAGCAGCAACA +CAGAGTCAGACACATGCCAAGGAACAAGTACACATGGACCTCACTACAGC +CATAACCCCAGCAGTGTCCCCAGCCCACTGCCCCTCTTCATAAACACTGC +AGCCAGCCTCTGAACCCACAAAGCGCTAAGAACCGGCTCTATAAATCTCC +CAAAGATCCCCTCTGAGTGTCACCGCAAACCATGGGTTCTACAGATCCCA +CACTGAACCTTCAAGGTCTCTGCAGTGTTGGGACAGTGATAGCAAACCTT +ACAGCCCTTGAGTGCTCCCTTAGACGCTAAAATCCAGAAATGTTTCCATC +ACCGTCCAAACTGGCCAAGGCCTGGCACAAGCATCGAGTTGGGTTTTGTT +TGGTTAGAATAGAAGAAGGAAGAGGAGAGAACAACCAGAGCAGCCAGTAT +GTGGCTGGTGAACCCCAGTCCAGGTTTCCGCACCTCCAGTGCAGACGTGA +GAGTCAGAGCCCGGGCTCGGCTTCAGCCACAGACAAGTCCGGCCACCGCA +AGTAAGGCTTAGAGCCGGGAGTCGGTTCGCACCAGCCACTGCTCGCTTTA +TTTCCGCCGCTGAACTCCGCCCTCCCCTTAGCCAAGGATAGATATTATCA +AAAAGAAAAAACAGAAAAGAAAAATACCACATCATAGTGTTCCCCATCCC +TCCTTTATCTTTGTATCTCACAACCTCATCCCTGTGGTCCAACCTTAGAG +AATAGGGAGAGGGAGTTAGCCCCTCTTTGTAGTCCCCCTCCCCAAAAACC +ACAGACACACAAAGCCAATTGCCAATTTCCACTTCCTTAAAAATCTCCAA +CCTGCAGCCCCGACTTAGATAGCAGCCCTCCCAGGAAAAGACGTGGCTCC +CTGTTCAGCTCTCCTCTCCTCTCCTCTCTTCTCCTTGGAGCCTACTGATA +AATTGACGCCAGGAGCCTGAGCTTCTTAGCAATAAATAAGCTCCAAATAT +AGAAGAGGGGGGAAAATATGATGAGCCTCTCTGACATTTGTCTTTAAAAT +AAAACTAGCTGCACGTCAAGTTTGAGCTTAATTTCTGGAAATAGGCGGAA +GTCGCTCCGGATCATGCATGGAAGGCTAATTGAAAAGATCAGTCGGGGCG +CTTGTGGCAGCCTTGTCACTTTGTGACAGTGCTCCGCTCCGGGAAATTGC +ATCGTCACGACAAACGGGACCGTGATAAAACGACCCTTTCCGTCCTTATT +TGTAGATCACTCAGACGAGATTGAACTGCACTTGTTTCCCCTTCGAGGGG +AGCCGCGTTTTCAGGGTAGCCGAAGGCTTGGGGCTGAGGGGGGGCCCTCA +CCAAGGCGCGGGTGGGGGCCGGAGCCTCAACTCGATGAGAAGTGACAGGC +GTTTGGGGGATCTGGGCTCCGGCCGGGACCAGCGCAAGCAGGGACTTTGC +GGGGACACCGCTTCTCCAACAGAGCAAGGCCTGGCCCACGTTTCCGGTTT +CTCCTAACTTCCTTTTATTGCCTTCCTTTGCTTCGCAAGTTCCATCTACC +CCTCCAGCTACAGAGCCCCACCTCTAGGCACAGGAAGCTTCCCGGAAAAA +GAAAGGCTGTCCCAGAAAGAGACCGAGAGAGACTTTCCAAACTTCGGGCA +TAGCCACGGCAATTCCCAGTCTGCTAATGCCAAGGCGGGCGCGTAAGGCC +GCCTAAATCTAGACCTCCCTCCTCACTCATTTCAAAAAATAACAACGTGC +CAGCCACCTCCGCAGATACCGCCGGCTGGTGCTTGCCCAGGAGACGCCAG +GGCCAGAGCGCCACTCCCAGCATCGAAATGGCAGAGAGAAAGCGCAGCTC +CAAATTCCCCTTCAGAGGTTAAGCCTCAATCATTGTGTCCCTTCCCTAGG +GACTGCTGGCGCTCTCGCCCACTGGCGATGATTATGCGCCTAGAACTCGA +CCGCGAAGCAACTAATAGGAAAACATATGGTGTCAATTTGGATGCTCCGC +GCCTCGCGCACACCCGGGAACGAGCGGCACAAAGCCCTGCCGGCCGGCCC +GCGACCCCGCGCCCCTCGGGGCCTGCCAGCCGGGCCGCAGCGACAAACGC +TCAGGGCTGCGCGCCCTGGCTGGGGCCCGCCCGAGAGACAGCCTGCGGCT +GGGGAGTCTGAGCTCCAAGGGGAGAGCCCAGCCGCCGAAGGCGAGCCTAC +CGGCCAAGCCCTGGGGTCCGGCAGGTTCTGCACAACTACTCCCGCAAAGC +TCGCCACCTTTGTGCCCTTTCCTCAGCTACGCGCTTACCAGCCCCGGAAG +CACCAGGGGGCGACCGGCGTTTCCAAAACAGATGGATAAGGTGCTGGGGA +CCCTCCTTAAGCCTGTGTGGTTCGGCCAGGGCAGGCTGCTGGAAGACCCG +GGCCTTTCCACACTTTGAGTTCAGTTGAGCCCCGACGCCGTGTGCCTCAA +CCGTAACCTCAAACCGGGCCTGGTTTCGCTGGGCCTCCAGGCTCCCAGGT +CGGAGCTCTAGACTAGCCCTGCCGCGTACCAGCACCCACCACGAACAGGA +AGGTGGGTGGGACCCCACGGGGTCTGGGCAGAGGAAAGCAGGGAGGTACA +AGGGCCATAAGTATCAAAAGCGCTCTGGGCCTGGGACTATCAGGACCCAA +GCAATTGCAGTTGCCAGGGCAGGGATTTTCCAATTCCTGGGCACCTCCTT +ACCAGACCCAGTAAACCGTGCTCTCTCCCGCGCCCTGTAACAGCGAGTTT +ACCACCCCTACCCTGCTGCAGGCCTGGGGGCTCCTCTCCCCATCCCTTCT +AGGCCCGTAGTGGGGTGAGGAGGGGAGGAGCTGCCCTGAGAGTGACTTGG +GGAGAGAAGCCCCCAACCCCGCCGGGTTGGTGGAGACTTTCAGTCTTGGC +TAAGCCCAAAGGGGCCTCCTTCTCGCTCAACTAGGAGAAGACTTCGCCCC +GCCCTGATCAGCCCAGCCCCTCTCTCCGGGGTCAGAGCCCGGGCAGGGGC +GAGAGGGGGTGTGAGTTACAGGATTTGGGGGGGATGGGGTTTCTCTACCG +CAGCTTCGAAAACTCGGGCGGGCTGTTCTTAAGGGCCCAGCCCCTGCTTC +TCCAGTATCGAGAAGAGCCAAGCAAACGCCCTCCCCTCCCGGGCTGCCGG +GCGCGGAGCGGGGAGCAGCCGCCGCAGGTCCCCGGGCCTCAGTCGGTCGG +CGGCCGGGCCAGCGCGGGCGTCGCGAGTCCCTGTGTCCTCCCCTGACCCT +CGGGTCCGCGCACCCCGAGCCCGAAGTCCCAGAAAGACCAGAGGCACTTA +CTGTTCTGCATGCTGGCTCTGGCTGGGGGCCGCGGGATTCCACGGGGCTC +GAATATGGGGCTCTGTTAGCAAGAAAATAGGAGTTAATCCTCGGGCAGCT +GCATCAGGTAGGCCTGAACTCCCAACCGAGGTGGACCTGGGGCTAGGACA +GGAGAATCTCCGTTCTTTAGGAATTGATCCACTCAACCTCTTGGGGCGAT +CTGAGGGTCACTCAGCTCTGCCCTGCAGTGCATACAAAATCTACCCTTTG +GGGCTTGAAACAAAGTACTGGAATATCCCCAATCTGTTTCCCCTACATTC +TTTAGCAGTTAACCCTTTAATCAGTAGAAGCGATGCCCCAATTTTGATTT +ATTTTCTTCTATCTGAACTATAGTGAAGAAGCATACTGAAATAGTTTGTT +TTGACTGTTTGTGGGTTTTGAGCCCAAAGCAGCCACCACAGAACTTGCCT +GAAATCTCGGATGTCTGTCCACTCTCACAATAAAAGGCCTCACACATCTG +CGCGCCCCTAGTTAAAGTCTTCCCCCTAAGACAAAACAGAAGGAGAAAAA +GGTATATCAAGCTGTGGTTCAACAGCATACGTCCATGGGCTCTCTGAGCC +TCACTCTCAGGAAAAACACATGCATCTAGGGCTCAGTCAAACTGTCATCA +AACTCTAAGTCCCAGCATTACACCCACATTTTCAGCGGCATCTGCCACAG +AAGTCTCCATCCTTTAAAAGAGGCTGCTCTGGTCTGGCTTGGGAGAATTG +GAAAATCTAGCAAGTTCGGATCCCACTTTGCAAAAATATAAAGAACCAGG +AAAAGGGGAAGGGGGAAACAGGAGGAACAGTGGAGTAAGGAGTAGAGGCC +AAGAGCTGAGGTTGAAGGGGTGTGAGGGGAGAGGAATACCTGAAGTTTGG +AGACCAGGGGAAGGGAACCTTGGAACTTCCTGGTGCCGGAGAGCATAGGC +TGGAGCAGTTTGGGAGGGCTGCAGGGCCACACTCCCTCCTTCCTTAAGGA +ACTTCACAAGACCCCCAGAACCCAACACTCTGCTTACCCTTTATCTTCTA +CTCCTCTCCCTACACCAAAAAAACTTCCCAATGGCCCCCTCTCCATCTAC +CTCCCAGCTTTCTGGGACTTTGAAAGGGGCAAGCCCAACTTTTTATCCCA +AACCTCACTTATTGTGATTAACTTCTCTTTTGGCGTTTAGATCTTCACCC +CTTTAACTGTACTGTGACACACCCTGTCTACCTCGCCTCACTGCTTTAAA +AAGTACGAACAGGAGGGGGTGAGCGTGGTCGACAAAGCCGACAGACGGCA +AACAATGGCTTCTATTCTCCAGCTTTCCTCGAACCCAAGGAGCAAAACCG +AGTCTCCCTAACCAGCAACACAGCTTCCAACCAAATGTACCAACAACCCA +CCAACTCACAAAGGGAACAGAGGGACGCTTCTAGCTTCATAAGCCCTGAC +CCAGTGCAGGGGTCCCCGAGGCTGCTCCCGTACGAACACCTCCCTACCTT +TCCCAAAGGAAAAAAAAAAAAAGTCTTTTGGGTGAGTGGAGAAAATAGAA +AAGTAATTTCTTGTTGTAAATATCTGGAGGTAATTGTGTTACTGGTGTGA +GTTGTTAGGGGCTGTAAAAAGATACAACGGCACCGTGGGGAGCTCAATTG +GGAAGAGAGAGTTACAATAAAGAGCCCATTCAAGAGGTCTGCCCCCCAAA +AAGAGGTAAAATAACAAAACAGTCACAGCATCATTTCTCTCTGTTTTTTT +TTAAATGCATTATTTTTTCTGTTTTACCTATGGTGATTATTGATCTGCCT +GCCTGCAAGCAAAGAATTTCAAGAAGCACATTTTACTCTACAAGGCCATT +CCTGGTCTACTTTTTAACTACTTGGTAGACAGCTTAAATCCATAAAAATA +AACCGAAAATGAGGACTTTTTCTCAGCATTGGGTAAATACTGGCCACAGC +AGAGGGTTACTAGTTACCCTTATCTAGGTTGGCTCTCCAATGCTTCCTTC +CTGTCTCTCAGTCCCGGCACCCATAGCCATGCCCTGGATAGGCAAAATCT +CCAACTCTAATGCAAAATACCCCACCCCAACAAATGCAGGACCCTGAAGC +TGCAAAGGAGTAGTAGGTGGGGAGATGGGGAATGGAATTCCCCTAGGAGG +GGTAAAACTTCCAGAACTCCACTTTGTAACCCACGCTGTGCACAATCACA +ACAGAATGCTCCCATCCTGGCTTGTAACTTCTTGATACCATTTTTTTTTA +AATTCAGTAGCTGAGCACAAAGAGGCCTCGTTGATTAGTTTTCGAAGCAG +CTGGGAAGGTGGTAGTATTTCAAATTCCAGTTCTGCTCCATTCCCACTTC +CCTCTCGCTAAGAAGCTATCTAATTACTTAAGTAAACGTGAACACTAAGT +GCAGAAGCAACCCGGGAAGTGGGGCACATCGACACCCGGAAGCAGTCCTG +TGCACCGGAGAGGTCAGACCCCCAACTGCAGCCTCAGCCCCCCAGCTCAG +CCCGAGGCTCTGTACGGCCTCGCTGGGGCCATAGAACCACATCCTGAACG +AAGGAGTCTCCAGACATTTTGGAGTCGCCCCAGCCTTGGACCACAAGAGA +GTGGTCACTGCCCCCACCTCTCTGTCCCCAACACAAGCCTCAGTTTTCAA +ATGCTGTTCTTTTTTTAATTACTTAATTCTCAAATTCCATCCCCAAACTC +TTTAACTGAGGTAAAGGGGAGAGCTCTCGGTCCTCCCGCCCCCAGCCAAA +AGAGTAATTAGCAATTATGATGACAAAGTTTTACTCTCTAGGGCCAAATA +AGATAACAACTAATCAAACTGCCTTCACGCTTTTGCAAAGGTCACTGGCT +ATAAAAAATGTAATGTCAACCGCAACAACTATTATTTCTCTTCAGTAAAC +TCGCCAGGCTCAAGCTCTTTGCCTTTCATTTCATTTTCTGCTCCCAGCCC +CTTCTAAAACCTTCCCAAGTTCGAGTTAAACGTCCAGAATGGCTTAGGGA +GCTTGGGAGAGTATAAGAAAAATAAAAAGGAAGAAAGAAAGAAACCACGT +TCACTTTGTTTTTAAACTTTCTAGAAATCGCTCATGAATGAAGAGCCAGG +TTTTAGCACTCGAAAAAGAAAGCATTTCCACTTGAAATTCAACTCCATTT +CCCCCAATTACACTTGCTAAAATTCAGGGCTATTATGGCGCAGGGAGACT +GAGAAAATCTGCACAAGGAAAGAGGCAACAACTTTATGAACTTTGAAAAG +ACACTTTTCCTCCTGGGATCTTAGAATCGAAAGCTCTCAAATTACTCCGA +CTAATTAGCCGGGAGAAGAAGTGATCAGACGAGGGGGAAGGCCAATGCTT +TCATACAGATTTATTTTCAAGGCCTTACCAAGAAAAACATAAGGGGATTC +GGAGTAAAACAAACAAAAAAGCAAACCAACTCTGCACCTCAAAACTTGCT +GAAATCCCAACACCTGGTGAGACTGGATCAGAGGAAAACAAGGAAAAATA +CCCACCAAGCGCAGGGGGCCGGAGAACAGGGAAGAGCCCCAGCCTCCGCA +AGGCAAGGGAGATGAGAGTCGGGGGAAGCCTGGGGAGCAGAGAGTTTTCA +AGTTCCGAGCTCAGCGCTCCAGTGGAGTTGGGGGCAAGAGCCCGGGGGCT +GGGTGGAAGCTGACAGTCCTCCCGCTCGGCTCTGAGCTCCCTCGGAGCGC +GCGTTCCACCGCCTTGGCCTGGTGGCTTCCTTCCCGGCTCGCGCTAGCTC +GCTCTTCCCTCTACCTCCAGCGTGCGGCTGCCTTGCCGACTGACTCCACT +CGGGCTGGTGGCGGGCGCGGTGCCCCCCTCGGCGCTCGAGTGCCGGCTGA +CTCTTCTGCGCCGGAGCCCAGTGCGGCACAAAGCCCGAGGGCCGGCGGGC +GGGCGGAGACGCGGCGAGCAGGTTCCCTCGGCGCTCCCTCGGCGAGTCCT +CGGAGCGCCCGCTCTCTGCGCGTTCGCTGGGCCTCGGGCTGGACAAAGCA +GCCGGCAGCGGTTGCTCTCTGCGGCCGTTCCAGGGCCTTGGGCACCACAG +AGCCTCTTCGTCTTTTCCCGCGGGTCGGGAGCATTGGGCGACGCTGGGGC +TAGGAGCCGCGGCTGCTGTCGCGCCTGGAGTCTCCCTTCTTCCCGCGAGC +TCAGCCCGCGCTGGCGCTGGCGCTGGCGCTGGGGCTGAGCTGGCCGCCCG +CCCCGAGCCCTGCGCCGCTCCCGCTCGCCGGCAGTCGCCCTCCGACGCGG +GCTTTCGCTGGAAGTAGAAAGTTTGGGCTCCTGCGTGGAAACTTCTCCGG +CCCAACTCTCCCGGCGTAGCAGTGGGGGAGGGGACCGGCGAGAGGGGAGG +AAGGAAGGGGGGAGGAAGGGGGAGACCTGTCTGAATATTGCAATAAAAAT +AAAGCGAGAAGAAAGAAGCGGACTCACCTTTATGAGGCATCCTTTCTGGT +TGTCACAGCTTCTGTCAAGAGTTTTGTTTGGTTGGGGTTTTTTGTGCTGC +TGTTGTTGCTTGAAGACCACAATGGTTTGAAATGACGGTGTTTTAAAGGA +GTTGCTGGTGAGAGTTTTCTCCACGGATGTTGCTGGGTTGGTGTGTGAGA +GCAATTCTCAGATTCCTGGGAAGGAGACAGAGATTGACAATAAAATGGGC +TGTCAGCGGCTGGAGAGTGAGAGATAAAGAGTGTGGGTGAGGGAAGTGGC +TGCAGCCAGCACACCTATGCTGATTGGTGATGGCTCAAGTGTGTTAATGT +GTGTGTGCCGGCGCCCGGCCTCGCCTCCACCGCTCCTCACTGGCCCATTA +GCGAAGCCTGACCTCTGTCATCATCCTCCAGCAAAACACTTCCTCCTGCG +CCTGAACCAGAGCGGGAAATGAGGCCGAGCCACGGTTCCCTTTTCAAACC +CACTAATCACTCCGCAACATGCAAATGCACCGCTCGCTCTCACACAAAAT +ATTGCTTTATGCAAAGCAGCGCCGGGGCCTCGCGCCAGCCGATTGGATGC +TCCCTCTCCCCGCCTGGTGCAATTGGTCCGTTTGTTTGAATATGAATACA +CTTGTTTTCGGCTCCGCCGGTGGGTCCCGGCTCCTCTCCCCGGCGCAGGG +CCCCCGAGCCCGGGCTCTGGCGCTCGCCTGCATCTCCCCGCTCCGCGCAC +GCCGAGATTCGGCGCGGCCCGCCCTGCTGCCGCGAACTTGAGCGGTCAAG +TGAAGGTTTCTGGGTTGGGGGTCGCGCCCCCACTCCCCCTAAGCTGGACT +CGGGACTCCCAGTCCTCGGAGGGTGCAAGTTTCTGTGCTGTCCTTTCTTG +CCAACTCCAGGACAGCGTGGCCTGCCGCCCCGCCCCCGCCCGCCCCCACC +CCATCCCAGCCGGGGCCCCAAGACACAGAGCACAGCGGCGGCCGCACCCC +AGCCCACCTGGCCCCTTGGAAGAAGAGGAAAGGGGCGGGAGCGTCACTGG +GTCCTGGCAGCTCCATTCCAGCTGCGGAGGCCGCGGCGAAGCCTAGGCCG +AGAGGAGGTTGCCGGGCCGAGAACTAAACGAGGCCAGAGGCCTCCCCAGC +CCAAGCCTCCAGGGCCTGTCCAAATCCTCCACCCCGCTCTCCCCGCCCTT +TCTTCTCTCCTTTCTCCTTTCGGAAGCCGCGGTGCGCAGCGGAGCAGAGG +CACAGCTCTGGCTGGAGAGGCCCGAGTAAACACGCCACTTACTTTGTGTA +CAGAGGGTTCTTGTGAAAAGCCCTGAAGAGTCCTCACCAAACACTCACCA +ACTTCTCCCACGTGCCATTTGTTGACTAAGTGCGGCTGCTTTTCGCAGCG +CCCGAGAGGAGGGGAAGCCAGGGGAGATAAGAGGGGAGGGGGAGTGGAAG +CCTGGGTGGGGGGGCGGATGACCAATGCTGGGAGGGATTCTCTCTCTCTC +TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCACTGGC +GATGTCGGTATGTCAGCGTGTGTCGTGTGTGCCACCGGTCATCTGTGTGT +GGTGCGTGTGTCTCCGCACCACGACTCCCTCTCCTGGGTCTGCTCAGTCC +ACGGAGGCAGCTCCCCTTCAGCTGTTGCCAGAAAACCGGGGAGGAAAGTA +AGTAAATGGCTTTTCTCTTCTGACCACACACCAGAAGTCCATTTGTTGAA +TGCCGCACGATTAGGACACACCTCAGTACACTCCAAAGGCGCCCCTCGGA +GCCTGCAGTTAAGGTGACAGGAGAGCGAGCGGCTGCCTGGTCCTGCGCTG +TCCCGAGCTCTCTCGGCGGCTTCGGGCCACGGAGCCGGGAAGGAGAAGGA +AGGCCTGGGCTGCTGTACACACCCCAGGACAGGGCGAGGGGGAATAGGGC +TGAAGAGCTGAGGCAGGGAGGCTGAAATGAAGCAGCCGAAGGGTACGCTA +GACTCTTCTTGACTTAGGGAAAGTGCTGAAAGTCAGAGCTCATCAATAAA +ATCTGCGCGACCTGAACTCGCTGCTGACTGGCCGCGTCGCCGCAGCCCCT +GGCAGCCGGGACAGTGAGGACGCTGCAAGCCGCCCTGGGCCGCCGGGCCA +CATGTGGGCCTCACCCTCTCGTTCCTGCCTGGGACCCAGCAGCCCTGCGA +CCAAGGAGCCCGGGCAGGGCTCCCGGGAAGCAAAGGCCTCCCCGGCCCTA +GCCAGAGGTGGGGTCGCATAACCCTCTCCCCTCCCCGGGCTGGGGAGGGC +TGCCGGCTCTAACCCTTCCCCGGGAGCTCGCAGCGCCGGGAGGAAACCTG +GGTCAGAGGTGAAGGAGGTGGCGCCGGGTGTCCAGGTCCGCGGCCTCCTG +GGCGAGGTTTCATTTCGCAGGAGCGCGACTTTCGGAGGATGCCGGCAAGT +GGGGCCGCGGCCCTGAGTCCCAGACCAGCGAAAGTCGGCTTTCTCTTTCT +CTCTCCTTTTACTTTCCAAGCGAGCATTAAAGAAGCTTGGACTCAAGACT +CAAGTCCGCTGTGCATGAGCGAGGGACTTGCGGGGGGGCGGGGGGGGGGG +AAGTGATTCTGTCCGAACTGGAGGCGAGTATCATTTTTACAACCTCTCAA +TTAGCGACCGAGTGGATTAGCACCTTCTTAAGCTTTGCCTCGGAAAGAAG +CAGCCGTAATCTTGTTGCTATTTCCCCCCAGGGCACTGGCTCTTTGAATC +AGCTCCTTCTCCCACCCCTCCAACCCCCATCTCGCTGCGGAGAAAAGTTT +TAACAAAAAATCAGAAAAGGCAAGGAGCGAGGAGTGAATGCCACTGACGT +CATTGGGTGGGGAAGGGGGCTCCGGGAAAGACTCCTGGAAACTCCTCCGC +ACAAACAAAAAACAAAAAGGACTTGGCTGCTTCCCATGTGTCAATATTTG +GGGAGGGGAGTTCAACCCCAGAATGAGGCCGAGTTTTCAAAGTTTAAGGA +GAGAGGGGTGAGAGTGAGATTTCCTCGTTCTCTCTGGACTGGTCTCAAGG +AAGGTGGGGGTGCTGTTCTACCTCGTGGGGAGCCTCACTCCCTCTGCCAA +GTACCGGCTCTGGGGGCGAAGCGGCCTAGGGGTGTGGGGGCCGAGACTGA +GGTGCGGGCGCGGTTGCCAGAGGTGTGTACAAAACCGAGACAACTCGCAG +GTCGCCATTTTAATTGCGGCTACCAACACGCCCGAGGCCCACTTGCTGCC +CTCCAAGACGCGGGGGGGCGGCGGGGATTGCGCTTTAGGTTCTGTCTCCT +TTCCCCGCCTCCCCACAGGCCCCTGTTCCCCCCTACCCTCCGCCCCCTGT +GGCCAGAGGGAGGACCTCTCAGGCCGGCGGGTGCGTTCCCGCGGGGGCCG +CCGGGGTCGTCCCACCCGGTAGCGGGGCTGTCTGCGTGGAGGGAGTCCCG +CTGGGGGACCGTGGCTCGCCAGAGCCTGCCCAGAGCTTCTAGCCAGTATT +GATGCGTCAACATGAGGTGAGGCAAGCATCTCACCCGCACCGATCCCTGG +CATTCCCCTGTGCCCACCCCATCAGGCCTTCGGGGAGGCAAAGAAGTGCC +CACTTCTGGGGGGAAGTGCCTCCAGCTCCCAGCTTCAGAACCAAGAGCCT +CCCATCCGGAGTTCTGACAGTTCTGACACCTCCAAACTCTCTCTTTCCCC +GGTCAAGCAGAGGCGCAGCGCCGGCGCGCTGGAAAGGGTGAAGACTGGCA +TTTTTTGGAGAAGGAAAGTCTTGGCAGACACCTGCGTCACTTTGTAGTGC +CCCAAACGTCTCTCTTTTTGCAGACCCTGGGAAGGTGGGATCCCTTGTCC +GCGGAGCTGGCAAACGGGTCCAGTGAGCCCTAAAGGCAAAGGCTCCCATC +CCGGCCGCCCAGTCCCTGGTGCCTCCCCCACTTCCAGGCCTTTGTCCCTC +TCCTTTCTCCAGCAACCTGCCGGTTCCCGCTAACCCGGCAGCCTCGCCGA +GCCCAGAGCCTAGAAAAGCCAAGAAGATCCCAGAGCCGCCCCGTGGCACC +TTCAGGCTGTGGCCACTGCTCGGCTTGGGGGGAAGCCGCGGTGCCCTCGC +CCTTCCTCGCCTCCTGCCAAATGGCCAGTGCTAGGGGCTCCCTGGGTTCA +GTCCTCAGTCCTCTTCCGTTCGCTCTGGGAGGCCAGCCTGTCTCTCTCTC +TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTGTCTTCTCCCT +GCCCACCCCCAAAATACCTTTAAAATAACATTGTCCAGTGGAGTCTCCCA +GCAAAGGGATTCCTAGCAGCCCAGCGGGTCAGACTCCCAAGGCTTTGCCT +CCCAGTCCCTCCATGCTGTTGTCCAGATAGGAGTTAGGTTTAAAACTCCT +GACATGTAGGACAACTGAAATCAGCGGCACTCTCCGATTTTTGCAAATAG +GGTTCCTAGAAAAGTTTGCTTTCCATTTCATCACCCTGTGACGATCCCCC +CATCTCTCTTTTCCCTGTAACCTCTGCCCCCAAGAGGCAAGAGTTCAGCT +TCAAAGGAAAAGCAAGCAAGTCAAGGCCACCTCAGTCCCTTCTCCCTGGA +TATCCCCTCTCTAAACCGCTGCCTATTCTAAAGGCCAACGACCCGGTCCT +GCGATTTGTCCCGTTGTAGACCTGGGAACAGGCAGGCGGGAACTGGGGGC +TTTACTGGGGGATTTGAGGCTGGGGAGGGGGAGGGAGCAAATGTCATGGC +TGGCTCGCTCAAGCATCCAGGGAACCGAAGCTAAGCGCATCCTGACGGGC +TTTTAAAATGACATTGATTAGGACAAGCTGTTCCCAACCCCAGTAAGAGT +TAATCTGCCTGTTAATCAAGGCACTAAGGGGCTCAATGCGAGTTTTATTA +GCGACAGGAGAACAGAGGCGGCAGCCAGGGATCAAAAGCCGGGATCCCAT +ATATTTGTCAGCGCTATCTCCAAAAAAAAAAAAAAAAGTATTTTCAATTT +GAAAACAATTCGGCGCTTTTCGTCACTTCCTAACCCAGTCTCACAGAGGG +TGACTTCCAAACCTGGCTAGCGGGGAAAACCGCTGCCCGGGGGACAGAGG +GGCTGACAGGAACTGCGGGTTGGCTCAGCCGAATGCGGCCGGGGAGAATT +TAAGAATTCTCAGCCCGCGCGGCCCGATGCCTCTGATTCCTCACGAGAGG +AAAGGGAATGAAAAATGAAGCAACAAATGACACCACCCAGGCTGGCAGCC +CTCGTTCCCGGCCAGACCCCGCTCCTCAGGCCCGGCTCTGGCGCCGGGTG +GCGTCCAGCCCCTGCACGCGCGGCGCGGCCCGCGGGAAAGTTTGTGCAGC +GAGAGTGACTGTCCTTCCGCCTCGCGCGCGCTGCCCCCTTCTGCCCCGGA +GGGGCGTTGGGTTCCCTTCGGTTTTCCTTTCCAATTCTAAAATAAATAAA +TAAACTCCGGGCCCTGGGGAAATCTGAATAGTAATTCCAGTCATCCAAAT +TCTATGAGAGGGTCTGAGGAAAAAAAGACAAGCCTATCACGGGCGCCCTC +CGATCACGAAGGGCACGGGCATGAGAAGGCGACAGAGGAGGTCCTCGGCT +CGCCCTGGGCGCGGAGCGAGGACTCTGGTCAGAGGTAATTATGTCACCGC +GTTTTCTCGCCGTGACAGCCGAATAAACACGATCTCCAATAAACATCTCT +AATGAGGGAGGAGGCCCGAGGATGGCTGGGTTTGATTTATGACTGGAGGA +GAAGGTCCACTTCCCACTGCGAAGCAGGCGACCTGCTCGCCGCCCAGCTC +CAGGGAGAGGAACCCGCGGAGGAGAGGATCCCGGCCCAGGTAAGGCGTGC +GGCCGGACTGCCACTGCGCTCGTCCCCCGTTTCCAGGTGAGGTGAGCAGG +GGGCGCCACCGCTCGGAGTCGGGCGGAGGTCCCAACACCTGTCACAGGTG +ACTGAGCTCCGAAGGTGCTCCCAGAAGACCTAGAAAGGGGGCGCAGGAGC +GCGAGTGGGAGTGGGGGTTGGGGGCTAGCCGGGGCCTGGCCCAGAGGCCG +CCCCAAACTCCCGGGCGGGGTTCTTGGGTGCCCCGCCTAAGCCGGCCTGG +GCGTCTCCAGCTGCTTTTAGGGCCGGGCTCCCAGGACTTTCGCCCGGCTG +AACCACAAGTTAGTCTAAGTTTGGGTCGTCCCTTCCCTGACTCACTAAGG +GGACACTTCCGGGCCCCGGCTCTGGCCCTCCAAGGGCCGCAGGGTGGTGG +GCGCTTCTCTTTCCCGGGCTTGGCGGCCCGGCTCCCATGGCGCCCGCGCG +CTTCCCGCCGAGGCAGCCAGCGCAGCGCCCGCAGTAACCGGAGCCCGCGT +TCTAGCTCAGTGAGAATCGCTAATTATTAGGTCTTCCGAAGTGAAGCTCA +AATCACACGCTGGGAGCTTTACGCGCTGCCCAGCTCTGTCGGCCGCATTC +TTTCGTACTCCGCGTCTTTCTGAGAAACGAACCCCATCTCTAGACTTTGT +TGCGGTCCAGCCATCTGCACTTTGCAACCGCGGGAAACTTCTGCTGCACC +TCGCCCGACCCGCGGCAGGGTGTCTTTAAGCGCTCCAGGCGCGGGTACGG +ACTTTCCCAAGCGTGGATGTCGTGAACTGCGATGCAGAGGAGGTCTGGAT +GCAAAGTGCGTCCCCACCTCCTGCATTTTTCGCGGTCGCGAGTGGCTTTA +GCAGACAGCAGCAGCAGACTCCCGCCCCCTACTCCCAGCTCAGGGCCGGA +CTGGAAGTCCACTCTTAGGAGTGGAACATTTTGCTACTTTTGCAGAAGAG +CACACTCGGCAAAGACAAGTCCCTCCTCCACCCCCCTTCCTATCCCTCCC +TCAGTAACTCGCTTCCATCTTTGTATGCCTCCTTTTAAAAGCAAAAATCA +AGCCCCGGGGCCACTTGGGGCGGGCTTTGATTTGGGGACAGCAGTCGCTG +GCAGCGGAGAGGCCCCGCGGGCCCCGAGCCGGGCCGGGGCCGGAGCCCGG +GCGGTTACCTGGGAGCGGAGGGCGGGGAGGCAGGTGAGCCTGGCAGCGCC +GGTTCCCACACTTCTCACCGCCGCTCGGCAGGGGAAGTGGCAGATCTGAC +AGCCGCGTTCTACGCGAGGACCTGCCCCAGAGTTTAAATGTCAATGATAA +GAAAAGAGGGTGCTCAGGCAGGCGCTAACTTTCCTTAATATCCACGCCAG +CGCCGTCCTCATTGGCTGCCCGGCCCGCGTGACGTCATGGCGGCTAGAGT +TGGGCACAGCTCTGCGCCGACTAGTTTTCCGGCCGGGCGGGAGCCTGCTT +CTCCCCACCCAGGGTCCGGCCGGCTCCAACCCCTGCTTTGGCCTTCCTTG +GCCCGGCCTGTGACTGCTCTAGCCCGGCCCGGTCCAGCCTGGGCCGCCGT +CCTGTATGGCGTAGAGTCGATCCCCAGGAAACTAGTCTTGCCGAGTGCGC +TCCTCCGCACCTTCGGGCACTAGGGCCCCAAGATCTCTGCCCTTAGGCTG +GCCAGCTACCTCTCTGGGTAATCACCCTGTCCCCTCCTCCGATCCCCAAG +GGAGTCCCTTCATCGGAGAGACCCGAAGGCCGCGCCGGGATGGAGAGGCG +CTTTTGGCAGGAATCATTTTTAGGAGGAGTTCGAGGCTCGATGAGTACCC +TCAACCTGGCCCTCGAGCCCGCAAGTCACTAGCTGGGCACAGACGGGGGC +TCCGGGAAGAGGACATGCGACCCCTTTTTCAGGGCCTAGGCCAAAGGTCT +CTCCAGGCCTGCTGGGTTCTCAAGAGGGAAGCCCTAAAGGGGGCCTACCC +GGGCTTCCCTCGCCCTCTGGCTGAAAGGCTCCAACCACATTAGAAAATGT +AGGTGATTGTATTTATCTTTGACTTTGAATTAACTGTTGACTTTGTGACT +TAGAGGAGGAAAACAGGAAAATCCCAGATTCTGAAGTCAATACTCATAGA +AATTGGGGCGGGGTCTGCAGGACACTGACTTGCTGGTCTGTGCCTGTTTT +TCCCTCACACCTTCTGTGGACTGCGAGATGGCTTAGCGGAGCTAGGCCTG +GCTATCTTGGAATGGAGATTTAGACCCTCGTTGTCATTCCCGTCCCTCAT +CCCTCAAAACAGGAAGCTTCTCAACTCCTTCCCCTATGCTTCCATCTGGC +TCTCCAATTTGAAAGTGACAGTGGTGGGGCCCGGAGGGGCAGGGGTCACT +TGAGGAGTTTGCGGGAGAGGAAGGGGCGGGGCGTGGAATTTCCTTTAGGC +AGCTCGTGGAGACCCAGCCTGGGTGGACCCGGGAGTGTGTGTGTAGAAGC +AGGGAGGGGGACGCCTGGGCCGGAGGAGGGTCCTAGGGCCAGTCCCTGCG +CGCCTTGATCCGGGCGGCGGCTAAGGGAGAGCCGAGCACAGATGGCGCCG +AGGCGGAGGTCTAGTGATTCCCGCTCCCGCCCCTGGCACACCTGGACAGG +TGCCGGGCCTCGCAACCGGCCAGGAGGCAGCTCCAGGCAGCCCGTCTGCC +CACTCCTCTTAGCCCGGACAGCTCCTAGCTGGACTTGATTTTTTGTCTTG +CTCAGCCCGTCGAGGACTGGAGGGCAGAGTAGGGGTGGGAGTGGGGGTAG +GGGTAGAGGTGGGGGTGGCGGTGAAGGTGGGGAGGAGAATGGGAGCTTTG +GCTGAGAAGTTTCCGCAGGATGTTCTTACTTATTTACAAACATTCTCCAA +ACTTTCTTTCTTCTTCCTAACGCCCTGGGCATCCTGTGTTAAGGCCTAGG +AGCGCCCACCTCCCACTGGCCACTCTAGTCTGGGCCTAGACCTTACCATG +GTCCTGTCGCCCTGCTCGGCTGGGAAGGGATGCTAAGAGAGGCATTTGTT +CTGGTTTCCCTGTCGCCGTCGGCCATCTCCAGTGACCTAGTTTCTTGGTA +AGCCCCTAGCTCCCCTCCAGGACCTGGCCCAGCCTCCAGCCTCAGATGTC +CTGAGGTCTCCCAGACTCCGCCGTCCGCCTTGGCGTGTGGGCTGCGGATA +GGCCTCGGACCTGTGTAGGCCTTCCTAGCTGGCCAGTTTCTGTCCGGGTC +TCGCTCCCCACACTGTACCAACCCTAGGCCGCCGAGAGGGCTGTTATGGG +CTTGTTTGGAGTCCAGGCCATTAAGTGTGCGCAAATCCCTGCAACCCAGC +AGGGTGCTCGAGAGCGACTCTGGAAACGCCACGGCCCCCGCCTGCTTATC +TGCCTGTCAATAAAGGGCGCGTTCGGGCTGCGCGGGAGCGCCGGTGGTGC +AGGCGAGGCCCGAACTAGGCCCTTCCGAGCTCCGGGCCAACGCACGAGCC +GCTCTCCATTTGTCCCGGGCAAGGAGGCTGGGAGGGAGGGAGCCGGCTCT +GGGGTCGCCGAGGGAGAAGGTGCGGGTTTAGCCGCTGCCTCAGCTGGATT +CTTGGAGAAGCGCTCGACCTCGGAGCACTCTGGAGACCCTACCAGAAATC +TAGTGCTGGGGGCTCCTCTCCGCGCCTGCCACCAGCCTTGGAGGAAGCTG +GGCAGGGCCCCGTGTGGTGCCCAGCCTACGAGGTCCCACCTCGCCTCTCC +CTGGCAGAGGCATCCTCTCTAGGCCACACTGGCTCGCATTGCGGGAAGAA +GGGCACCGCGGGCGGCCCGGGGGCATCATCGACGACTCGTAGAGCCCCAA +ATGCCGAGTGCTACCTGAGGCAGGCTGTAGCTGGGGTGAAAAGGACCGGA +AGCGGGAAAGAAACCTCTTTTCTTTCAGGCCTCCCTTCAGCCCGGGGTAG +CACAGACTGCAAATTTCCGACACCTAGGGCAGCTCCAGGCTCTGATTCTC +CACCGCACAGTGAGCGAGCTCGGCAGCCGCCCAGTCTGCGTAGGCTCCCA +GGCCAGCCCCGGCCCCAGAGCTTCCCCATCAGCCAGCAGAGGCTGGGTGG +AGAGCCTGGATGGGCGTGAGAGGCCTTGAAGTAGGGGAAGTAGTGGAGAG +AGAGAAAGATAGAGAAATCGGCTCTTGGCTTGAACTGTTGTTCTTGTCGA +AGGTATGTTTTCCCCTCCCGGCCTCTGTCGCTTTTCCTCTCTCCCCTTAA +CTACTTTATGCAAATAAAGCCGCTTCCAGACTGGAGGAGCCCCTACCGCT +GGATCTGTGCTACCAGGTGGGTGGGAATTGATTTAGTATTTGCCTTTTTA +TTGAGAATAGGCACTGAGTCTCCCACCAATTATAAAATAAAAATGGATTT +TCCTCTTAAAATTTAATTTTACTCAATCTGGAAGATAATGCATCCTGTTA +ATTTCTACAATATTTTTAAAAAAGGATTCCAGGGTGAGCGCTAACTTATA +AAATGGTTTAATAAAGCTTTTCCATATACAAATTAATAGGAGAGGAAAAA +GCCCCTAAATAATTGATTTAAAATACTGTGTATTATTTGAGTGTCATTTC +AAATAGCTGTACAAGCCAGTAATCAATATATCATCTAAGGAATCTAATTT +ACTGGGCAGTACGTGTGGCTCTTGCTCTTCCTTCCCTCTCCACTTCCTCC +CCTTTAAACAGAAAACTTGTTTTAACAAGATTTTTATTTTAAATCAAAAT +TGAAGGAAAGTTTTGTGAATTCGAGCGTCAAAAAGGGGACTATTTAGCAA +AGATAATATTTGCCATCTCTTCACCCCGGTCTCAAGGATTGCATAATGGC +ATGATTATGTGCAATTCTGTGTTTTCTCTGCTATTAATTTATTTTCCTGC +TCTCATTTAAATAACTACTTTACTTTTTTCTCTCTTCTATTTTGCCACAC +CATAAAAAGTTTTCCCGGACCTCTGTGGAAAATCTCCAATCCTTCCAGTT +AGCTTTGTCACAAACAAACAAACAAACAAAAAACAAACAAACAAACAAAA +CAAAACAAAAAACTCTACAACAATCAATTTGAGAAAACTCTGCTTTTTCT +TTCCTTTTAAACATTTTCATATTAAGTCAGTTTGTGGCACCATGTTTGAT +TTCTTTCTCTCCCTTGTCCGGGTAGAGATGGAGACATTAGCTGAATTCCC +TGGGGGTGATTGGATGCAATTCACTGAAAGTAGACAGGCACGTCCTGGAT +GTTAGAAATTCACTTTTTCTCAACGTGACAAGGCCGGCTTCGATCTACAA +TTGTATTTGAATGGGCAATGAGCGGAAAGATCTCTCATCATTAAGCTTGC +TTCTACTTTAGCAAAATAAGGAGAGCCTTCATTTGCACACAAATGCTCAT +AAAACTCGGATTCCCTGCAACCCTTTAATAAAAAAGGATTGCTGCATAAT +TTAAATTGGAGGCCAGGGGAAGGCTGAGAGAGGGAGATGAGGGGGTTTCA +ACTGAGTCCCCTCCCTTCCCCCAAAAGGTCCATGTGATCGAGTTGACTTT +TTTACTTTAAATCTTAAATAAGATGTGAGTTGTAACAAGAGGATTGGCAC +TTACTCCGTGACCCTTATAATTGGATTAAATATAGACTGAGACGTACAAA +AACACACCAAGATTGACACCTGCCAACTGGACTTCCTTATGATTGATTGT +GATGCTTCGTGCTGGCAACAATAATGAAATAAATTGTACGGATAAAACAG +CACATTTGTCATTTCCGTGCCATGAGTGAGGAAGTCAACGAGTTAGGCAA +GCTGTTAGCTGACAGGCGCGAGCGGGAGGCAAGCTAAAGAGATAAATAAG +GATTCCAGGCATTGACAGGACAAATTATAACTTGTCACAACCTTTTTAAA +TTCAGAAGTTTTCAATTAACATATATATTGCTGTTACATATAAGATAAGG +GGGCACTGACGTAAACACGCGTGGGGTGCAGGGACCCCCCCCCCCAGTGC +CAAGGGTTTGGGCATCCGGGCTTGGGCATCCAGGCCTCTCTGGCTCTGTT +CTCCCATTCTGGCAAGCCGGAGGGCACCCAGGTTTGCATGGCCAGCCTGT +AGGCCCGGGGCTCCGTAAGGTGGGTGAGAGTGTGATAGGCTAAGTGCAGC +TGCTTCTTTTGCTAGGAGCCCCAGTTCACAGGTCCAGCACCCTTTCTTCA +TGGAAGCAAAGCTCCCAGATCAAGGGAGAGGCTGGGCGAGGCCTGGGCCC +AGGTCTGGAAGGACAAGTCCTGCTCTGTCTCCTGGAGTCCTATGTAAGGA +GTAAGAGATAGAGGGCAGAGGCTCCCCCTTTTGCGCTCCAATGTCTTGCC +CTCATAGGAAAATCTGAGCTGCTGGACACAACATATCAACAATGGCCACA +TCCTGTGGGCAGGCCTAGGCCACTGAAACCTGGTGTGGCCTGAGGCTGCT +CCTGAGCTCTCAACTCCTTCTCTGACTCACCGGCCCAGTGCCGCCAAGGA +ACCGGTCCTGTGTCCTACCTAGGAAGAGCTGCTTTTCCCTCCTCAGACTT +TGTTTCTGGTACAGTTCCCAGGGCTCTTCCTTGACCCATGGGTAGGAACG +AGTTTGCCAGTGGGTCCTTGATAACCTGAGGCCATTCACCTAGAGCAAGT +GAGATTTTCAGAGGAGCAAAGCGCTGGAGTCACCCTGTGAGGCTGCAAGT +TAGGGGAAGCCATGAGATTTCTGGGGAAGTCTAGGTGTTGTGACTGTGAC +TGGGGACTGCTGTGGGTGAGGTTTGAAGAGTGTGGAGGGACTGTAAACTC +TGCAACCATCTTCACCCCAAAGGAGGCTGGCTTTTTGGTTTTAAAGCTAA +CCCCTATCCTAAAGCAGAATCTAGACTTGCAGGGCCTCTCTGAACTCAGG +TCCCAGCCTCCCCGCAAAGTCCAGCTGGAAAGGAAAGTTTGGGCGGGAAG +CGAGCGTCCCCGGGTCTGAGGCTGCTGGGTGGAAAGCTGGCCTAGGAGGG +CGAGTAGGGAGCAAAATAGGGCCTGGTCCTTGCGGGGCCGGGGAGCTAGA +GGCCGCAGGAAGCTGGGAGGGCCCTTTCCAGGCAGGCAGGGCAGCCTCCT +GGCGCGGCCCAAGGCGCGAGGCAGCCGCTGGCTAGGGAGGTCCAGTCTCC +TGCAGGCCAGGGAGGGCTTCCTCTGGGTGCAGCCGTCTCCCTCCGCTCCT +CAGCTTGGCTACTTGGTGCTCGGACCCCGCATCCTAGTCCTCGTCCTTGT +GGGACAGAGGCCAACCTTGCTGTCGAGGCCCCAATATGTCACCACAAACA +CTCCCAGAACAAGAGCATCAACCCCAAGCTCCAGAACTTCTGGTCTTAGC +CTACTGGAGCCTGCCACCAAATTAAACACCGCGAAGGCTTTGAATCCCTG +CAAAGACGGAGCCTGGAAGAAAGGGAGGGAGGAAAAGGGAGGAAAAAAAA +CAAGTTACATGGAATTAGTTGGAAGCGGGCGCATTCCCCAGCGACCGCAG +CCATTAACATTATAATCTCAAACGCCATTTTTTATGTAACACTATTGTTA +GTAAATCAACTCCTCAGGTCCTCAGAGACGCTGACCCCTGGCAATTCAGT +GAAAGTGTAATTATCTCCCCGAATCTTGGACAGATTTAAGAGATTACATT +TCAACTAAATCTATATCAATGCTAATTCCCTCTCTCCCCCCAGCCTGCAG +GTGCTAGGCACGGGAAATGGCGTCAGGCCCCAGCAGAACGCTTCACAAAG +AGGAGAGGGCTAGCTGTGTACAGGGCCAAAAGAAATGAAGCCCCACATAA +AATTACACCTTTTTTTTTTTGCTACAAAACCTGGTTCTTATATAGCAAAG +TTAAACAAAGCAGCTATGCTAAATTAGCGTTACATAAAGGCGAGTTTAAT +GCTCGGTTACAGTCAACTGGTGTATCTCTGATGGCTAATTGTCTATCAAA +ATTAAAGAGAAAAGAACAAATGATTCGTTATAAGAAGGTGTTAAAAGCCT +CAACAAAAGGACATTTCACAAATATAATATCGGCAGCTCCCGGATTGCCT +GCGGGGTTGTTCAGGCCCCGGGCCTGCACAGCTATGAGAAGTGGGGTGCA +GGGTGCTATTTGCCCAGCAAAAGCTCATTTCCTCCCAAATGAGTATAATG +AAAACCCGAGAGGCGATATTAGTGTAAAGATCGGGATTAGTCCAAATAGG +AGCCGCGGACTTGGGCTTCAAAGGCGACCCCTACTCTTTTTGCCCAGTCT +GGGGGCGGAGGGCGCTCGAAGGGATACTTCAAGGACACCACATCCAACTT +GTCGCAGCCCCACGTTCAGGCACAGGAGGGAGCGAACATTGGGCAGAGGG +TAATTTCAACAAAGGACGGCAGGCTCCGGGGATCCCGGCTTTTCCCTGAG +TTCTCTGGGTTGGAAGGAGAGGGTCCGGGCTCTGTCGGAGGAGTGGGTAC +AGCCCAGCACATGCTTTTCTGACGCGCAGCGCTGGCCTGGGGAGTGGGTG +CAGCTGCTGCAGCCAGCCCCCACCCCGCCCCAGGCTGGGAAGGACGCAGA +GTATAATACGACGGCCCCCTTCCCCAAGGGGACACTAGATCCAGAGCTCC +AGGCATATTTGTTGTTCAAAGTTAATTATACCTGAAAGCAACCAAAATGC +GCACGCCAGGCCCACGGAGGCCGATTGCCGACCAGCGTAGCCGGCCCGCA +GCGCCAGAGAAGCCGCTCACTCCGGCGGAGTCTCTGCAAGAGAATCTGAG +GCTGGGGAATAAAAGCCGAAACTAAATCAGGCAGCAAGAGTAACAAACCA +TCTGGAAAATGGACCCACGGAGCCGCAAGAATGTACTTTTTTTTTTTATC +CTTGACAACTTGTGTCCTAAAGAAAGTGTATTGAAGATAATTGAAATGAT +TACAATTCATTGCTGCCTGACTTTGAATATGAACAGTCACATAATGACAT +CCCCGCCACACAACAACAGTTTAATTTCCATTATCCGACTTCGGGATCCT +AGCGCCAGCCGCCGGGGCAACGTGGCGCTAATGCAGAAATCTTGGCTCCT +GCCTGCATTATTCATTTCGGGGACGTGGGGATGGGATAGGAGTGGAGAGT +GGGTTTCTTCCCCTCCCCCGAACTTATTCTGAAAATCCCGGGGACCAATG +GACACCGAGGAACCGAAAGCCGAGAGAATAGCTGTCAAGGGGCCACTTTG +ACCGACGGGGCTGCGGTCGACGGCGCTCCCCGGCTGTCTTTTTGTCCCAG +GGGTTCCCAGGCCCGCAGGGCTAGGATCCCCCAGCTCCCACCCTAGTCAG +TCCCAGTCAGGGAGGACCTAGGCCAGGGCCTCCTCCCAAGGCTGTCATCT +GGCGGGGCAAACGCTCTTCTCTCATTCCTTCGTCTCCCTTCCAGCCCTCG +CATCCTTTCCTTCTTTCTGCTTCAGAGCTCTCAGGCTCGCGTGCAGGGCG +GGATGGGCCCGGATCGGGGGCCCCTTCGCAGATTTGAAAGTTGCCTCGGC +CTTGATCTTCTCCCAGCCTCCCTGCTGGGGACTCACCCCCACATCCCGCT +ACCCCCCGGGGAAAAGCGAAGAAAGCCAGAGTCTCTTTGCACGGCGGGGA +CGCTGGCGCTCACCTCTGGGCGCGGCCTCGGTGGAGCCTCAGGGCCAGGG +CGGGGTGTGGCGGGGTGTGGCCCGGTGGGGTGAGGGAGGGACCCGGGGTG +CAAGCCAGGCCAAGGCCTCCTCAGTGCGCAGGCGCCGTTCGGGCCCGCCG +CCCCCTCCCAAGGCGTGGGGTCCCGGGGACAGACCCCGAGCCCCTCTCTG +CGCAACTACCGCCTCTAAAAAAAAGACCATCTGGTAATTGTCTTTCTTTA +GATCTTCCCTTAATTATGCTTTTAATTAAAGATGGTTCAAGGCACCGGAC +CACATGAAGGGCAGTAATTACAAATTACATTACAAACCCGACAGACGTAG +CAGGATCTGCTGGGAAAAAGGTACCGGAATAAAAATTTGACTAAAGTTTG +GGATAAATTAATCGGTGGCTTGAAGAACAGTAGCACATTTCTGATTATGT +AGGCTCCAGCCAGGATTTAAGTTTTGTGTCATGATTGTTTTCATATTTCT +TTGACATCTATTGATTTGGAGGCAGCTGCAAGCCTTTGTCACAGGAGAGA +AGAGCAGTCACAATATATTAGCTTGATGGCATAACTCGAACCGGAGAAGC +GAGGGGAGCCTGAGTGACTGGGGCGCACATGACCCCCCTCCTGGGGCCTT +TGGGCTCAACCCTTACTTTTAACTTGTTCTAACAGGAATAATGGAGTAGT +ACTACTAATGCATGGTCAGAAGGGGCTTTTCTGTCTAGAACGCAGGCGGC +GGGAGTTGCACCGCCACAGCCCGGGAGACCAAAGAGTCTCCACTCCCCGC +TCCCGGCGCCTCCTCGCCGACCGGAGCCCCGAGCCCAGTGAGCCCAGCCG +GTCCCACGTCGAGAGGCGCTGGGTTGGGAGAAGTTCTGCTGGTCGTGGGC +TCGGCCCCCAGGCGCCAGGCCGAGTGCCCACCTCGGCTTCTTTAGGGGGC +CTACAGCGGGCAGCCGAGCGGCTGGCGGACCCGGAGCTTGGGAGGCGACC +GCCAGGCTGGTGCCCGGCCTGACCCGGCGTTCGCGGCCGCCCGCTCGCCC +GCCGCGGGCCGGGAGCGTACAGGAGTGTGACGCAGATTGTGAAAACAGAA +GGGAGGGAGTTGGGTCATTTCCTTCGCTAATCATCGCCCCCTCCTGCTCC +TCCTCCCCACCCCCATCCCATCCTCGCCGCCACCCAGCCTCGAACTCTCT +TCCTTGCCAGAGTCTGCCTCACTTTGAGCCAGTGGCTGCACTTTATGGAG +AAAATATATGTGCCCATCACTCACCCATCTATTTGCAGCGTCCATGGAGC +GCCTCGGGGAACACGCATGGACAATTAAACACACCCACTTACGGCGGGAT +GATGAGGCTTTCTGTTAACCACATGTGTTCAGAAATGGATACAGCCCTAA +TTTTGACACGGAATGCAGCTAATGCACCTTGCTATAGATGTACGTCCGTT +GGAAAAGTGTGTGATGGGCACCTGATCTACACCAAGAGAACAGGGCTGTC +TGCAGAAGACCCAGCGGCCTGACACCTTTTCTTGTTGCCGGGGAAGGAAA +GTTTTTCTTTTGATTTGTCCTCTCACGATTTTTCCCTTTTCCTTTGCATT +ACAGTTTCAGAGAGGAATGTAAATATTTTGACTAGACCTCTGCAGGGGCC +TTTTAAACACCAGGCACAATCATCTGTGGAATACTGTAGTTCATACTTTC +AAAACTTGGGTGTTAAAGAGTCTGTCTTGCTGAGGAAACCCATAGAACTA +GTGGCGACCTTTCAACTCCCTATTTGTGTGATGAAATGAAGTATGCCCTA +GTGATTGTCGAATTTTAAGGACTTGTTCTGTCACTGCTACTTTCCGATCG +TTTGCAGGGAAGAAAAATCAATCAAACAGACCTTTGATGGGGTTGTGGCA +AGGTCACATTTCACTGTGCTCCAGGCTTACCTCTTCTTAACGCCCCTCCC +TGCTGTGGAGCGTGTGCAGGTAGTATGCAAAACTCTAGAAATAATATTTG +AAAAAATTAACACCTTGTTTATCTCTTCTGTGTATTTGATATAGGGGTTT +CTTTCTTTTCCTGTTTTGGTGTTTAATACAAGGCTGATATATTGGAACAG +AATGCAGACTTCAAAGAAACTAAAATTAGGAGGCAAATAGCGTCAAGGTT +TCCTCGGTTTCTGTATGTAGTACAAATAGTATAGCGTCTTTTCATCCAAA +AAGAAGCAAAAATTGCCAGGAGGCATAAAGCATCTCTGAATATCCGTTTT +TTTTAAAGAAACAAACATTTCCCAAATATTGATGTACGCATGGTTTTATA +GTCTGAAAATATTTCTAGGCACAAATATGGCATACAAACATTCGTTTCAA +CTCTGTCGTTGTTGTTAAAATGACAGTAAATTATAGTTTATTTTAAGATA +CCTCCCTGTTAATGTCAGTTGAGGTTATTTTAGGGCCTGGATGCTCTAGG +AAGACCACCTAAAATGTGTTTATTTCTCTGCCCAATTCACCTATAGTGTA +AGGAGCATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTATACTT +TAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTTGTTACATGTGTATA +CTTGTGCCATGTTGGTGTGATGCACCCATTAACTCGTCATTTAGCATTAG +GTATATCTCCTAATGCTATCCCTCCCCTCCCCCCATCCCACAACAGTCCC +CAGAGTGTCATGTAAGGAGCATTTTAAATAAAATATTTTGGGCATCCTTA +AGTCCTTTTTTAAAAATCCAACATTCTACAATTGTGACAAATAGGCTGAA +AAATTTTGTTTTGTTTATACCAAATTCATTTTAATAAAGCATTTGCTGAG +ATTTTAATACAACAAATGCCAACAAAATGCATCAGAGTAGAAAAAAGAAA +ATATTTTCAGAATTGCCTATAATATTGCTTGTGATCCTAAATTTTTTGAT +GCAAGGAACTTGAATTTTTCAGCTAATATTATTCTGTTTTCTTATTCTGT +GTTTCTATTAGAACACTCACCTATGCTCTGCTTCCCTTGCTGTCTTCCCA +TAGCTTATGTGTGCACTATGAATTTCAATAAATATAAATTACTGCTTAAA +AGAGTAAAGAATGGCTACTTTATGACTCACTGTTCTCTCCTTACAATCTG +CTCAAAAATCTTTTTTACAAATCCCATTGTAGCTACTTCCCCTCAATTCC +ACGATGAAAGTGAATGGCAAATGCCATTCAATTTAGAGGAACTCAAGCAC +AGAGAATATAAAGATGTTGTTCAAAGCCTCCCTCAAATCTATCTGTAGGC +TTACAAACAAAATGAGACTGGAGGCAACATCAGTACACATCTCCGACTCC +ATATGAGGTTACTTGAAGCTTTGGGGTTCACTCTGGAAACAGAAGACATG +CATCAAGGTATGTGTTCCTTAGAGACTGACAAGCAACAGTGGACCTCAGG +AGAAATAAAACAACTCATGCTCTCAACTGCCTCTGATTTGCAGACAAGGA +AGAGTTTTCTCTAATTTTTTTTTTTTTTTTTTTTTTTTGCCTGCATTACT +TTTTCTGTGCTTGGTGGCTAAACCAGAGAGCAGTCTGCAACATTTTGCTT +TTGGGGATTTCCTGTGGCTTTGCCACATTCCCTGGAGAAACTCATAAAGT +CCTGGAGTCTATGGAGGGATTACAGAGAGCCACAAACATCATTCTTCCTC +TAATCCATCTGGGGCAGATACAGTATTGATAACAACCTTTCTGTTACTTG +ACAGTTTCAGACCATTCAGATGAGAACAAATAATAGGAATTTGGTAGTGG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/seg.fa Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,140 @@ +>seg +CGAGGCTCTCTCAGGAAAGGAAACGCCACGCAGTGGTGAGGACAGGAAGTGCGCGGTTCT +GCTGCGGGCCTCTCTGTGGTCAGGACCCGGAAGCTCTCTGGGCCTCAGTTTCTTCAGCTA +CTCAGTGCCAATAATGCCAGCTCCCACTGCTCCGCGACCAGGGCCTCTGAGCCTCTGTCA +CGACCTGCACATTAGCTGAAAATTGGAAATTCCACAGCGTGGCCGCGCTGCCGCCTCCCC +TCGCCCACCTCGACGCGACGTCATCCATTGTCCCTCATTATTCATTATTGTTAGAGGGCT +CTTAAGTCATCCTTTCTCCTTCTGAACTAGCCGTTGCTCATCTGCTCATGTCTGTGGCTG +CAGCAATTAATGCCAGTTTCAGTCAGTACAAACCAATCATTCCCTCGGTTTGCTTCTTTG +GCTGCTATAAACAATTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCGCTTTGTCACC +CAGGCTGGAGCGCAGTGGTTTGATCTCAGCTCACTGCAGCCTCGCGGTATGGGAGATGTC +CATTTAGTCACGCCCCCACCGGCGCCTGCCTGCCCCTGTCCCGCCTGGCCCCCACCGGCC +CCATTCGATGTTCACCGCGCGAAGAGCAGCCGCACCAGCGCCGGCCGTCCCTGGGCCACC +AGGGCCCGGGCCAGCCCCAACACCTCGTCCGTGTGCCCGCGCCACACGCGCTGCAGCTCC +TGGCGCAGGCGCGCGCCTCGGACACAAAGCGCCCGGCCTGGGGAATCTTTTCTACAGAAA +TAAAAGTACTACTTCAAAAGGATGTTTATTTTTATTGTTGCGCTATTTGTCGGGGCTGAG +AACGGAAAACAATCTAAACAATCTAAACTATTCAGGTGTCAAAAATACAAGTTATTGGTT +TTTTGTTTTTTTGTTTTTTTTGGTTTTTTTGAGACGCGTTGGTAGGGCTCCATGGTGCTC +GCTGCGCCAGGATGCAAGCCAGCTGCTGTTTCAGATCCTCGCGATGGACATTTATATCAC +GTCTGCTTTTTTGGCCGCTGAAACAAGCAGCCGCGGGGTACAGGTGGCTTCGTCCACCGA +GGTCCCCTCACCCACGCTGAGGCGTCGGAAGCTGCGGACACTGCTCGCGGCCCCTCCTGC +CGGACCCCTCGCGGCTCACCAGGCTTGCACTCCGGAATTACGGCCTGGTAATTGGTTCCA +ACGCGGATCATGCTGTCTGTGGAGCCAGGGGGAGGCAGTCAGGACTCCAGGGAGGGCGCG +CTCCGTTTCGCGCCGTTGTTCCTCCCAGATTTTATAACCCAGGCGTGTAACAGGCATATT +TACACTTGTGCCACGCACAGGATCGTGCACTTGAAGCAGCAAGGCTGTGGCAGAAATCTG +CACAGCTGTAGCCATCAGAAACAGGCTCGCGTCGGCTCTGGCCGCCCTCGAGGAGCCCTT +CAACCCGCCGCTGCGCTGTGGGGGCCCCTCTCTGGGGCTGGCTGAGGCCGAAGCCGGCTC +CCTCTGCTGGCGGGGAGGTGTGGAGTGGGAGGCGCGAGCGGGAGCCGGAGCTGCGCGCGG +AGATGTGAGTGCTAGGATGTCAGGGCTTCCCCAGCCCAGCAGTTGCGAGTCTGGAATCGC +GTGTTCCGCAAATTTACACAATCAAAGCCACCTCACTGGTTTCCGTTCACTTGCCGCGAT +GGGTACCACCAAGGGTTTGGTGAGGGAATTGGGGGATGGGGGCAGTGCCAGGCCAACAGG +TCCCCCATCCACTCTTCAGTCTGAGCAATGCCCATAAACTCGACTGACCTTTTTGGACAA +AAGCTTGCGCGGCGTGCCCGCGCGGCAGCGTGACAGTTGACGGCAGGGGGCGCTCATGCG +GTCGCGGCGAAAAGTCTCAGGGCACCCTCCGTTTCATTGGCCACAGCTGAGCCACGCGCG +CGCCGCGGGAACGTGGCCAGCAGGTAATGCGCGTACGCTTGGTGGTCGTGCACGCGCAGG +ATGGGCCGAGCCCCGCACGCCCCGAGGCAGCACCCCGCACGCAGTAGCCGGGCGTCGAGG +CGTTCCCAGCCCACACCAGGCGCGGGCTTGGTGCCAGCAAAGGGACCTGCGCGGTGCCCT +GGGGCCGGGGAGGCCCGCGCAATGTTTTTGAGGCTCATGGTGTGTGGTGGGGGTACCCGC +GCGCATCCTCCCTGGGCCCAAGATTCCTGGAGCTGGAGAACCCCCTTCCTCCCTGAGGCA +TGGAGACTGGGCTGGTCCTGAGCCCACTCCAGGCACAGGGGACACACCTGCTTCCTTCTT +AACTGAGTAGAGCAGAGTTATTTTGAAGATCGGTTTTCAGCAGGACAGTAAAAAGGCGAA +CTGGGAGATTGTTCATGCAGCAGCTTCTAAAACCAGTTTTTAGATAAATGCACCTTCGTC +TGTGGGGGGTGGCCGCACCCAGCCTCGCTTCAGGTGCCTGACGGGGTACGTGCTGCGCGT +TTTCTCATGTGGGAAAGATGCCGGCCCCCGCTGTTTGGGGTGGAAATCCTCTAACCCGCT +GGGCCTGTGCGCCAGGGCTGAGCAACAGCGCGGAGCCGTGCATCTGTCGGGGGCGGGACG +CGGCAGCAGGGCTGTGAGGGCTGCGTTTTCTCTGCCAGCCTGATCCGCATCCCCTGCCCC +TCGGTCGTCTGCCAGTGTCCGTGTATCTTTTGCCCCAGCTGGTGCGGGTTTAGGGATGTC +AGCCCCAGGAGTCACAGGTGAGCTGGTTCCAATGGGAACCTCGGCATCACCTGGGAACTG +AAATATGCATTGTCAGCCCCACGGCAGACCTCTGAATCAGAAACTCCGCGCCATGGGCCG +CTACCGCATCCGCGTGGCCACCGGGGCCTGGCTCTTCTCCGCGCCTGCGCACCTTTGACG +CGATGCATACACCACATGAAATATCCTATCATCTGTAGGCTCATTCATTTCCCTAACAGC +AGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCAAAGCGAAAAGTCCTAAT +AATAGAAGAACCCTCCATAAACCTGGAGTGACTATATGGATGCGCCCCACCCTACCACAC +ATTCGAAGAACCCGCGCCATCGGGTCCTCTGAAGTGCGCGGAAAACCAAGGTCGCGGGAG +ACGATCCAAAGAGGATGGGCTACGGTCAGACTTCGCGGGTTCAAGTGATTCTCCTGCCTC +AGCCTCCCCAGTAGCTGGGACTACAGGCGTGCACCACCACATCTGGCTAATTTTTGTACT +TTTAGTAAAGACATAGAGACGCGCCGGCCCGGGAGCGCCGCGCAGCCCGGGCTCCCGCCC +GTGCCTCCGCCTCCACACCTCCCCGCGAGCAGAGGGAGCCGCGCCTCCTGTCAGATCAGC +GGAGGCATTAGATTCTCATGCCAGAGAGAGCCCTATTCTGAACTGCGCATGCGAGGGATC +TAGGTAGCGCGCTCGTATGAGAATCTAATTCTTGATGATCTGAGGTGGAACAGTTTCATT +CTGAAACCATCTGCCCTTCCTCCCCCAAACGCCCCCCACCCCCACCCCACCACTGTCCGC +GCCCGCGCCCGGCAGCGAAGCAGTTAAGCGCGACTCCTCTACTTTGTAGGGGGGCTCCTT +GCACACTAAAAAGAAAAGGAAGAAACACACCCATCAGCCTCCTGCCTGTTTCAGGCCCAG +CTGCCAGCGGCAGTACCGCACCCCTCAACCCCACCACCTCCTCACAGGGGCTTGGCTGGC +CTCTCGGGGGTGGCTTTTCAGGAGGTTAAGCCCCCGACAGGATTGACTTCCACGCGGCCG +AGTGCACGAGGTCCAGCACCGCGGACGGCCGCGCCGCCTCCAGGCGCTTGAGCAGGTCCC +GGGCGTGGCCGCGGAAGGCCTCGGGCGCGTAGACGCACTCCTCGCGAAGAGCGCCTCGGT +CCCAGCGGGGCTCTGGAAACGGTGCACGCGGCGCCCGCCCCTGTCCTCGCGTCACAGTGG +TCCTCCGCCGGCTACGCGCGGAGACCCGGGAGCGGCCTAGGACCGGAGGCGCGCGGTCAT +CAACCCGCTCCTGTACACGGTGTCCTCGCAGCAGTTTCGGCGGGTGTTCGTGCAGGTGCT +GTGCTGCCGCCTGTCGCTGCAGCACGCCAACCACGCGTTTGATCTACAATCGAGAAAGAA +CTCAAGGGCCAATAACGCGTGTAACACTCACCGCGAGGGTCCACGCGGCACCTGGAAAAT +CGGGTCACTCCCACCCGAATACTGCGCTTTTCCGACCGGCTTAAAAAACGGCGCGCGAGC +GACGGTGCCCGGCCGCGCGGCGTCGCCCTTGACAGCTGCCTTGTGGATCTTCTGCAGTTC +CGAGTACCGGATTCGGTACCCGGAACCCGCGACCCCCAGCTCGGCTCTCCCCACCCTCCG +GCTCGGCTCTCTCTGACCCCCAGCTCAGCTCTTCCCCACCTGCCAGGACGATTTCCCCAA +AGCCAGCGCGCAGAGCGCGTGCCGCGGCACAAATACCGCGCCGCCGCAGTGGCCCGCGCC +ACCAACGGCAGCGAGCCGAGCCATGCTGCTGCAGGCTTTCAAGCCTCCAGCGTGGGACAG +GTGACTCCTCCTCTAACCTGGGCATGGAGCAGATGGGCTGGCAGACGCAGAAGTGCCTGG +AATGGCAAGAACCCCTCCCCCCACAGACCGAGGTTATGCAAGTAAGGTTTCTGGACTACA +TGTTCAGATTGGATGAGAGAAAAACCTCTAGGTCTACTCTGATTGTGCTTTATTTTCACG +TTCTGACTGGATGACAGCAAGTCTTAGGATAACCAATCAGAACAAGATAACAAAGCCCGA +TCAGAGTAGGCCTAGAGGTTTCTCTCATCCGATCAGACTATGTAGTCGAGAAACTTCATT +TGCATTAAACTCAGTATATAAAGGATGCCAAGAGGGGTGGCTTGCCCTTCCAGGCTCATC +TGCGTCGGCCTGCGTAGCTGCTCTGTGCCCGGCTTAGAGGAGAAGGAGGAGGAGCCACTT +GCCGCGCATGCCAGAGGCTAGAGTCATCTACCGCGCATGCTGGAGGCTGGAGCCTACAGT +GGCTCACCTCGCTGCTGCGGTTGGTGGCCGCGAGGGTGACTACAGCGCGGAGTCTGATCT +GTACTATAAAGAGGTACAAAGTTCTGAGCGCTGTTTAGGAGCAGCTTTCCATTTGTGTAC +CGCGCCACATATTACATTTTTACGGATTTCTGCGGAACTCCCGCGCCTCTTCACGGGTAG +GTCAATTTCACTGGTTGAAAGTAAGAGACAGCTGAACCCTCGCGTAGGCATAGGAGATCA +TCCAAAAGGTGTGTGGATTTCAAACCAACCCAAAGAGAAGGTAAGATTTCTTCCGCTAAG +TGATGGCCACCAGATGGCTGTGCATCTCAAGGAATGGAGGGAGGACGTCTCTTCTGGACC +AGAACTGCCAAAGTCCACCATGAGCACTACCTCTCTGCTCTAAATCAAAGAGACAGGGAT +GAAGATCTGAAAGCGCGCCGGGCTTCATTACGGGCTCGTTGGCCACACCAGCGGCCCCGC +CTCTCGCCACAGCCTCGCGGTCCCCACAAGTATGAAATGGAGCCCCACAAAAATCTACTG +AAGCCTGCGTCCATTCTTGTTGCCTCTGACTTTGGTAGTGGAAAGGGTGTCCTGCAAAAG +CTGGGACCATTTATCACAGAGCTAAACGCGTCAGGTCAGCAGAGCTGAGCCACCCAAGGT +AGGAGAGAACTGCTCCCCACAGCTTTGACCACATGGGATTCTGAGGGTACTTTGTGGGAG +AAGCTGGTGGCAGGTTTCAAAGTGGTGGAAGTGGAGAATGCCTCAATCCAGGAAGCCCAG +GCAAAGCACAGGCTTCCTGGCTGAGTCTGGGGGTTGCCGGGCATTACTCCGCCAGACCCA +GTGGTACGGGTCTGGGCGCGCCTTGCAGAGCCCCACGGCCTCCTTCGGTGAGGACAAGAA +GTGGTAGTTGGTCGCGTTTTAGGGAAAATGACAATTAAGCTAAACTGCTAAAGCTGGAGA +TGATGGATAAGACAAGGATGAGAAAAAGAAGAAGACAGAAGAATTTCTAGGAAATTCAGA +TTCCTTCTGAGAAAAGTGAGGAGGCAGGGGACAGGACAATTTAAAGATGCCAAAGAATCC +TTTATTCTTCAAAATTTCAAAATCTTTCAATGCTACTTACTAAAGTAGAACCACTTTAAT +GGCGTTGGTGTTTACCTCATTTCCTCTTCACTCATTAACAGCAGTATTAGTGGGTCTTTT +TAGTCTATTTCATCTTCTGTGTCTATCACACCGCGACCTATGCAGCCTCTGCCCGAGGGA +GCCCCGCAGCCCAGAACACCTAACAAAAGCAACGCAGGCAGCCACCAGTGATTACAGGAG +GCTCCCCCAAGACCTAGGAGCTGGTAAAGGGCTATTGCTCTCCCGTCTCACCGCAAAGCA +CGCGCCCGGCCAGGGTGAACGCCGCGCGTGTCTGGAGTTTGTTCCTTCTGATGTTCGGAT +ATGTTCGCGCCCACCATCACGCCCAGCTAATTATTTTGTATTTTTAGTAGAGACGGGGTT +TCATCGTGTTAAGCAGGATGGTCTCCATCTCCTGACCTCGTGATCCGCCCGCGAGGGACG +TGGCTCAATTCATCCACGAATTTTCTTTCGCGGCGGCAGGCGGAGAGGAGTGCTCGGCTG +GCCTCTGCCTCCGGGAGCCAGGCCCCCTGCACAGCTGCCCTGGAGCTCCCCAGGGCCCAG +CTCATGGACAGCCGGGAGAGCCCCAGTGGGAGGAGGGAGTAGCAGAGAATAGGCCGTCAA +GAGAAAGTGCGCAGCGTGGAATTCAAAGATAGTGTGAAGCTGGCATGGGGCAGACAGGAC +GGAGGCGTTCTGGAACGCAGGCGTGTGCTCCCAACTGCCTAAATGGCTGTGTGGTGAGGT +GCGGAGGTGCGGCCACACCCCTAATGGCGGTGTGGTAAGGCGCGGAGGTGCGGCCGCAAC +ATCCTCATGTGTCCTTTGGTTTGCGTGTGCCATGCAGCCCTGCAGACGCAGACAGCACCC +CAGTGAGCTCCTCCCCAGGGGGAGCGCGTTAACATCGGTCCTGGGGAAACCCACTGTGCC +TGCTTCCAAATGGAAATCAGGGCGGCGCGCTCTTTTCCCCCAGTCTGGAGTGCAATGGTG +CAATCTCGGCTCGGTGCAATCTCGGCTCACTGCAAGCTCCGTCTCCCGCGCTGAGGAAAC +AAATCGTTGGCTCAATAGTTTTCCTTTTGTGTAATATACTGTCCCAGTGTGTTTAGGGAG +TTACGCGCCGCCGCCACCACCATCGCATAATTCACCGGCATTGATGAAGGCTGCCGCGGA +GGGGAAGAGGGCAGACCTCAGCGCTGCGGGGGCCGGCGGCGCGCTCGGGAAGCAGCGCGG +CCCCAGGAGGAAGGCGGCGCGGCCGAGGCCAGAGCCGGCGGCTACTGCGACCTTCCGGCT +GGCGCGCAGTGGCAGGCACCTGTAATCTCAGCTACTCGGGAGGCTGAGGGAGGAGATTCA +CCTGAACCTGGGAGGAAGAATTTGCAGTGATCAGAGATGTCGCCATCGTACTCCAGCCTG +GGCAACAAGAGTGAAACTCCATTTCAAAAAAAGAAAAAGGATGACCAGGAGCAAATTAAT +CACATGAATTCCATCTTGCTCAAAAGATATTACAATCAGGAAAAACATGAAAAAAAATCT +GAGCAAAAAGACAAAAAGGATAATTACATGTCTTTGCTATTTAGTTCTACTCCTCTTTTC +CTTGTATCTTTTTGTATATCCACCTCTGCAGTCTACTGGTACCTCTATGTTCAGATCCAA +TATCGCGTGAGGTAATAAGTGGAAAAGAGCTGATGAATTTTCAGGTGATTTTCATTTACA +CTGAGGAAATGTAACCAAGTTGGGAGGAAAAAAATCAATGATCTCTATGTCCTAATGATA +CTGAAAATTTTAAATTTTCAATATAGTATTATACACACCTAGAACTCAGGGAAAAAAGAA +GAGGCTTCGTCCAATTATGATATTCTTCTCTCCCTTTCTGTTTCAGTTCTGGCCCTAGAG +CAAAAATGTCTGCGAGGGCGTTCTGCCCTTTGTGATTTGTAAAAGGCACCGAGGCGCAGC +CCGGAGGAGACAGCGCGCCTGGCACTGGCGTCACTACAAAAAATCAGTTCCAAGATGACT +CACGCGCACAAAGAAGGCTAACGCCGAGGGTGCGCCCGGCTGGCGGAGGGCGCGGGTCTC +CAGAGACGCGGGAGGGCGGGCCGTGCGGCGGGTGAGGCCGCGGCCAAGGCTATAAATTCG +CAGGCCGCGGCCGGGCCCCACAGGAGCAGCCGCCCGGGGCACCGGAGCTGCG
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,8 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <!-- Locations of all fasta files under genome directory --> + <table name="all_fasta" comment_char="#" allow_duplicate_entries="False"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/all_fasta.loc" /> + </table> +</tables>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Fri Sep 06 09:54:27 2019 -0400 @@ -0,0 +1,8 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <!-- Locations of all fasta files under genome directory --> + <table name="all_fasta" comment_char="#" allow_duplicate_entries="False"> + <columns>value, dbkey, name, path</columns> + <file path="${__HERE__}/test-data/all_fasta.loc" /> + </table> +</tables>