Mercurial > repos > iuc > mothur_mimarks_attributes

changeset 7:5106f3ce22a3 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"
author iuc
date Thu, 05 Nov 2020 22:17:09 +0000
parents 8354a02a83e1
children bfbd98549bc4
files macros.xml mimarks.attributes.xml
diffstat 2 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon Dec 02 06:06:49 2019 -0500
+++ b/macros.xml	Thu Nov 05 22:17:09 2020 +0000
@@ -15,7 +15,7 @@
             <exit_code range="1:" level="fatal"/>
         </stdio>
     </xml>
-    <token name="@SHELL_OPTIONS@">set -o pipefail;</token>
+    <token name="@SHELL_OPTIONS@">set -o pipefail; export TERM=vt100; </token>
 
 
     <!-- Input parameters -->
--- a/mimarks.attributes.xml	Mon Dec 02 06:06:49 2019 -0500
+++ b/mimarks.attributes.xml	Thu Nov 05 22:17:09 2020 +0000
@@ -47,7 +47,6 @@
 
 The mimarks.attributes_ command reads `BioSample Attributes`_ xml and generates source for get.mimarkspackage_ command.
 
-.. _mimarks.attributes: https://www.mothur.org/w/index.php?search=mimarks.attributes
 .. _BioSample Attributes: https://www.ncbi.nlm.nih.gov/biosample/docs/attributes/
 .. _get.mimarkspackage: https://www.mothur.org/wiki/Get.mimarkspackage