Mercurial > repos > iuc > multiqc

annotate test-data/megahit.txt @ 27:7591bce96601 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
author iuc
date Tue, 18 Feb 2025 23:18:25 +0000
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27
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
1 2025-02-13 13:23:44 - MEGAHIT v1.2.9
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
2 2025-02-13 13:23:44 - Using megahit_core with POPCNT and BMI2 support
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
3 2025-02-13 13:23:44 - Convert reads to binary library
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
4 2025-02-13 13:23:44 - command /usr/local/tools/_conda/envs/__megahit@1.2.9/bin/megahit_core buildlib /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/reads.lib /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/reads.lib
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
5 2025-02-13 13:23:44 - b'INFO sequence/io/sequence_lib.cpp : 75 - Lib 0 (/data/dnb10/galaxy_db/files/c/5/2/dataset_c52c6559-228d-4131-9eec-f5b8d04f08c8.dat): se, 1 reads, 1232 max length'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
6 2025-02-13 13:23:44 - b'INFO utils/utils.h : 152 - Real: 0.2031\tuser: 0.0028\tsys: 0.0074\tmaxrss: 14696'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
7 2025-02-13 13:23:44 - Start assembly. Number of CPU threads 10
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
8 2025-02-13 13:23:44 - k list: 21,29,39,59,79,99,119,141
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
9 2025-02-13 13:23:44 - Memory used: 83886080
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
10 2025-02-13 13:23:44 - Extract solid (k+1)-mers for k = 21
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
11 2025-02-13 13:23:44 - command /usr/local/tools/_conda/envs/__megahit@1.2.9/bin/megahit_core count -k 21 -m 2 --host_mem 83886080 --mem_flag 1 --output_prefix /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/k21/21 --num_cpu_threads 10 --read_lib_file /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/reads.lib
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
12 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 148 - Preparing data...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
13 2025-02-13 13:23:44 - b'INFO sequence/io/sequence_lib.cpp : 115 - Before reading, sizeof seq_package: 324'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
14 2025-02-13 13:23:44 - b'INFO sequence/io/sequence_lib.cpp : 117 - After reading, sizeof seq_package: 324'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
15 2025-02-13 13:23:44 - b'INFO sorting/kmer_counter.cpp : 76 - 1 reads, 1232 max read length'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
16 2025-02-13 13:23:44 - b'INFO sorting/kmer_counter.cpp : 82 - 2 words per substring, 2 words per edge'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
17 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 153 - Preparing data... Done. Time elapsed: 0.0209'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
18 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 156 - Preparing partitions and calculating bucket sizes...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
19 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 80 - Minimum memory required: 5243336 bytes'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
20 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 138 - Lv1 items: 161, Lv2 items: 30'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
21 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 139 - Memory of derived class: 5243252, Memory for Lv1+Lv2: 1124'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
22 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 165 - Preparing partitions and calculating bucket sizes... Done. Time elapsed: 0.0257'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
23 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 172 - Start main loop...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
24 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 0 to 120'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
25 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0003'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
26 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0022'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
27 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 120 to 361'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
28 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
29 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
30 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 361 to 602'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
31 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
32 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
33 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 602 to 843'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
34 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
35 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0002'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
36 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 843 to 1084'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
37 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
38 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0002'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
39 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 1084 to 65536'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
40 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0027'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
41 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0031'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
42 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 204 - Main loop done. Time elapsed: 0.0096'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
43 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 207 - Postprocessing...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
44 2025-02-13 13:23:44 - b'INFO sorting/kmer_counter.cpp : 405 - Total number of candidate reads: 1 (1)'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
45 2025-02-13 13:23:44 - b'INFO sorting/kmer_counter.cpp : 407 - Total number of solid edges: 26'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
46 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 210 - Postprocess done. Time elapsed: 0.0595'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
47 2025-02-13 13:23:44 - b'INFO utils/utils.h : 152 - Real: 0.1204\tuser: 0.3707\tsys: 0.0656\tmaxrss: 30296'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
48 2025-02-13 13:23:44 - Build graph for k = 21
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
49 2025-02-13 13:23:44 - command /usr/local/tools/_conda/envs/__megahit@1.2.9/bin/megahit_core seq2sdbg --host_mem 83886080 --mem_flag 1 --output_prefix /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/k21/21 --num_cpu_threads 10 -k 21 --kmer_from 0 --input_prefix /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/k21/21 --need_mercy
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
50 2025-02-13 13:23:44 - b'INFO sorting/base_engine.cpp : 148 - Preparing data...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
51 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 369 - Number edges: 26'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
52 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 413 - Bases to reserve: 704, number contigs: 0, number multiplicity: 32'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
53 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 421 - Before reading, sizeof seq_package: 184, multiplicity vector: 32'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
54 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 428 - Read 26 edges.'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
55 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 429 - After reading, sizeof seq_package: 184/26/572, multiplicity vector: 26/32'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
56 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 440 - Adding mercy edges...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
57 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 191 - Read 1 reads to search for mercy k-mers'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
58 2025-02-13 13:23:44 - b'INFO sorting/seq_to_sdbg.cpp : 355 - Number of reads: 1, Number of mercy edges: 529'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
59 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 444 - Done. Time elapsed: 0.2585'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
60 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 445 - After adding mercy, sizeof seq_package: 5640/555/12210, multiplicity vector: 555/555'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
61 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 506 - Finally, sizeof seq_package: 5640/555/12210, multiplicity vector: 555/555'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
62 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 153 - Preparing data... Done. Time elapsed: 0.3852'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
63 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 156 - Preparing partitions and calculating bucket sizes...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
64 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 80 - Minimum memory required: 7022 bytes'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
65 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 138 - Lv1 items: 444, Lv2 items: 90'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
66 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 139 - Memory of derived class: 6870, Memory for Lv1+Lv2: 2496'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
67 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 165 - Preparing partitions and calculating bucket sizes... Done. Time elapsed: 0.0129'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
68 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 172 - Start main loop...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
69 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 0 to 167'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
70 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
71 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0005'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
72 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 167 to 355'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
73 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
74 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
75 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 355 to 543'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
76 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
77 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
78 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 543 to 731'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
79 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
80 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
81 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 731 to 919'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
82 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
83 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0002'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
84 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 185 - Lv1 scanning from bucket 919 to 65536'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
85 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 192 - Lv1 scanning done. Large diff: 0. Time elapsed: 0.0026'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
86 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 198 - Lv1 fetching & sorting done. Time elapsed: 0.0024'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
87 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 204 - Main loop done. Time elapsed: 0.0066'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
88 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 207 - Postprocessing...'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
89 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 793 - Number of $ A C G T A- C- G- T-:'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
90 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 794 - 0 253 302 302 253 0 0 0 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
91 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 800 - Total number of edges: 1110'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
92 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 801 - Total number of ONEs: 1110'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
93 2025-02-13 13:23:45 - b'INFO sorting/seq_to_sdbg.cpp : 802 - Total number of $v edges: 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
94 2025-02-13 13:23:45 - b'INFO sorting/base_engine.cpp : 210 - Postprocess done. Time elapsed: 0.1141'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
95 2025-02-13 13:23:45 - b'INFO utils/utils.h : 152 - Real: 0.5262\tuser: 0.5163\tsys: 0.3042\tmaxrss: 269456'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
96 2025-02-13 13:23:45 - Assemble contigs from SdBG for k = 21
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
97 2025-02-13 13:23:45 - command /usr/local/tools/_conda/envs/__megahit@1.2.9/bin/megahit_core assemble -s /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/k21/21 -o /data/jwd02f/main/079/102/79102477/working/megahit_out/intermediate_contigs/k21 -t 10 --min_standalone 300 --prune_level 2 --merge_len 20 --merge_similar 0.95 --cleaning_rounds 5 --disconnect_ratio 0.1 --low_local_ratio 0.2 --cleaning_rounds 5 --min_depth 2.0 --bubble_level 2 --max_tip_len -1 --careful_bubble
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
98 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 129 - Loading succinct de Bruijn graph: /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/k21/21Done. Time elapsed: 0.148410'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
99 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 133 - Number of Edges: 1110; K value: 21'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
100 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 140 - Number of CPU threads: 10'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
101 2025-02-13 13:23:45 - b'INFO assembly/sdbg_pruning.cpp : 160 - Removing tips with length less than 2; Accumulated tips removed: 0; time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
102 2025-02-13 13:23:45 - b'INFO assembly/sdbg_pruning.cpp : 160 - Removing tips with length less than 4; Accumulated tips removed: 0; time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
103 2025-02-13 13:23:45 - b'INFO assembly/sdbg_pruning.cpp : 160 - Removing tips with length less than 8; Accumulated tips removed: 0; time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
104 2025-02-13 13:23:45 - b'INFO assembly/sdbg_pruning.cpp : 160 - Removing tips with length less than 16; Accumulated tips removed: 0; time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
105 2025-02-13 13:23:45 - b'INFO assembly/sdbg_pruning.cpp : 160 - Removing tips with length less than 32; Accumulated tips removed: 0; time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
106 2025-02-13 13:23:45 - b'INFO assembly/sdbg_pruning.cpp : 169 - Removing tips with length less than 42; Accumulated tips removed: 0; time elapsed: 0.0000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
107 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 158 - Tips removal done! Time elapsed(sec): 0.002'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
108 2025-02-13 13:23:45 - b'INFO assembly/unitig_graph.cpp : 83 - Graph size without loops: 0, palindrome: 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
109 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 166 - unitig graph size: 1, time for building: 0.002'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
110 2025-02-13 13:23:45 - b'INFO assembly/contig_stat.h : 40 - Max: 576, Min: 576, N50: 576, number contigs: 1, number isolated: 1, number looped: 1, total size: 576,'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
111 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 184 - Graph cleaning round 1'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
112 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 200 - Number of bubbles removed: 0, Time elapsed(sec): 0.000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
113 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 210 - Number of complex bubbles removed: 0, Time elapsed(sec): 0.000024'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
114 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 221 - Number unitigs disconnected: 0, time: 0.000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
115 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 245 - Unitigs removed in excessive pruning: 0, time: 0.000'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
116 2025-02-13 13:23:45 - b'INFO assembly/contig_stat.h : 40 - Max: 576, Min: 576, N50: 576, number contigs: 1, number isolated: 1, number looped: 1, total size: 576,'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
117 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 267 - Time to output: 0.000192'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
118 2025-02-13 13:23:45 - b'INFO main_assemble.cpp : 286 - Number of local low depth unitigs removed: 0, complex bubbles removed: 0, time: 0.000034'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
119 2025-02-13 13:23:45 - b'INFO assembly/contig_stat.h : 40 - Max: 576, Min: 576, N50: 576, number contigs: 1, number isolated: 1, number looped: 1, total size: 576,'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
120 2025-02-13 13:23:45 - b'INFO utils/utils.h : 152 - Real: 0.1675\tuser: 0.2808\tsys: 0.0330\tmaxrss: 22464'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
121 2025-02-13 13:23:45 - Local assembly for k = 21
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
122 2025-02-13 13:23:45 - command /usr/local/tools/_conda/envs/__megahit@1.2.9/bin/megahit_core local -c /data/jwd02f/main/079/102/79102477/working/megahit_out/intermediate_contigs/k21.contigs.fa -l /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/reads.lib -t 10 -o /data/jwd02f/main/079/102/79102477/working/megahit_out/intermediate_contigs/k21.local.fa --kmax 29
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
123 2025-02-13 13:23:45 - b'INFO localasm/hash_mapper.cpp : 99 - Number of contigs: 0, index size: 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
124 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 315 - Hash mapper construction time elapsed: 0.003884'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
125 2025-02-13 13:23:45 - b'INFO sequence/io/sequence_lib.cpp : 115 - Before reading, sizeof seq_package: 324'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
126 2025-02-13 13:23:45 - b'INFO sequence/io/sequence_lib.cpp : 117 - After reading, sizeof seq_package: 324'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
127 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 324 - Read lib time elapsed: 0.001268'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
parents:
diff changeset
128 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 330 - Insert size estimation time elapsed: 0.000001'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
129 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 218 - Lib 0: total 1 reads, aligned 0, added 0 reads to local assembly'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
130 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 338 - Mapping time elapsed: 0.000047'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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diff changeset
131 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 232 - Minimum number of reads to do local assembly: 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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132 2025-02-13 13:23:45 - b'INFO localasm/local_assemble.cpp : 346 - Local assembly time elapsed: 0.004100'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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133 2025-02-13 13:23:45 - b'INFO utils/utils.h : 152 - Real: 0.0094\tuser: 0.0553\tsys: 0.0074\tmaxrss: 14696'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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134 2025-02-13 13:23:45 - Extract iterative edges from k = 21 to 29
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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135 2025-02-13 13:23:45 - command /usr/local/tools/_conda/envs/__megahit@1.2.9/bin/megahit_core iterate -c /data/jwd02f/main/079/102/79102477/working/megahit_out/intermediate_contigs/k21.contigs.fa -b /data/jwd02f/main/079/102/79102477/working/megahit_out/intermediate_contigs/k21.bubble_seq.fa -t 10 -k 21 -s 8 -o /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/k29/29 -r /data/jwd02f/main/079/102/79102477/working/megahit_out/tmp/reads.lib.bin
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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136 2025-02-13 13:23:45 - b'INFO main_iterate.cpp : 190 - Selected kmer type size for k: 8'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
iuc
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137 2025-02-13 13:23:45 - b'INFO main_iterate.cpp : 123 - Selected kmer type size for next k: 8'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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138 2025-02-13 13:23:45 - b'INFO main_iterate.cpp : 138 - Processed: 1, aligned: 0. Iterative edges: 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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139 2025-02-13 13:23:45 - b'INFO main_iterate.cpp : 142 - Total: 1, aligned: 0. Iterative edges: 0'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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140 2025-02-13 13:23:45 - b'INFO utils/utils.h : 152 - Real: 0.0136\tuser: 0.0433\tsys: 0.0101\tmaxrss: 14696'
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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141 2025-02-13 13:23:45 - Merging to output final contigs
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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142 2025-02-13 13:23:45 - 1 contigs, total 576 bp, min 576 bp, max 576 bp, avg 576 bp, N50 576 bp
7591bce96601 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
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143 2025-02-13 13:23:45 - ALL DONE. Time elapsed: 1.490756 seconds