Mercurial > repos > iuc > multiqc

annotate test-data/hicexplorer2.log @ 23:abfd8a6544d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:22:18 +0000
parents 01237d721a9f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
diff changeset
1
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
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2 File small_test_rf_matrix.h5
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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3 Pairs considered 99983
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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4 Min rest. site distance 152
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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5 Max rest. site distance 1500
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
diff changeset
6
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
diff changeset
7 # count (percentage w.r.t. total sequenced reads)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
diff changeset
8 Pairs mappable, unique and high quality 52726 (52.73)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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9 Pairs used 35934 (35.94)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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10 One mate unmapped 8777 (8.78)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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11 One mate not unique 3603 (3.60)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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12 One mate low quality 34877 (34.88)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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13
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
diff changeset
14 # count (percentage w.r.t. mappable, unique and high quality pairs)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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15 dangling end 209 (0.40)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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16 self ligation (removed) 5056 (9.59)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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17 One mate not close to rest site 751 (1.42)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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18 same fragment (800 bp) 10146 (19.24)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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19 self circle 618 (1.17)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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20 duplicated pairs 12 (0.02)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
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21
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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22 # count (percentage w.r.t. total valid pairs used)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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23 inter chromosomal 5849 (16.28)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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24 short range < 20kb 8071 (22.46)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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25 long range 22014 (61.26)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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26 inward pairs 6977 (19.42)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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27 outward pairs 8907 (24.79)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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28 left pairs 7012 (19.51)
01237d721a9f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
iuc
parents:
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29 right pairs 7189 (20.01)