Mercurial > repos > iuc > multiqc
annotate pycoqc_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
author | iuc |
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date | Mon, 02 Sep 2024 14:22:54 +0000 |
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24
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
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1 <macros> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
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2 <token name="@PYCOQC_COMMAND@"><![CDATA[ |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
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3 #set $pattern = "\"pycoqc\":" |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
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4 @LN_FILES@ |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
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5 ]]></token> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
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6 <xml name="pycoqc_form"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
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7 <param name="input" type="data" format="txt,json" multiple="true" label="Output of PycoQC"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
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8 </xml> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
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9 <!-- add here your test files and tests, the more stringent the better --> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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10 <xml name="pycoqc_test"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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11 <test expect_num_outputs="2"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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12 <repeat name="results"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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13 <conditional name="software_cond"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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14 <param name="software" value="pycoqc"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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15 <param name="input" value="pycoqc.json"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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16 </conditional> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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17 </repeat> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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18 <param name="title" value="Title of the report"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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19 <param name="comment" value="Commment for the report"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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20 <!-- <param name="flat" value="true"/> --> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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21 <output name="html_report"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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22 <assert_contents> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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23 <has_text text="Title of the report"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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24 <has_text text="Commment for the report"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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25 <has_text text="General Statistics"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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26 <has_text text="pycoqc_count_plot"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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27 <has_text text="pycoqc_read_len_plot"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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28 <has_text text="pycoqc_read_qual_plot"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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29 </assert_contents> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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30 </output> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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31 <output name="stats" ftype="tabular"> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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32 <assert_contents> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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33 <has_text text="pycoQC_mqc_generalstats_pycoqc_passed_median_read_length"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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34 <has_text text="pycoqc_json"/> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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35 </assert_contents> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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36 </output> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
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37 </test> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
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38 </xml> |
f7e2f1eb3a16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
iuc
parents:
diff
changeset
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39 </macros> |