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comparison pycoqc_plugin.xml @ 24:f7e2f1eb3a16 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
author iuc
date Mon, 02 Sep 2024 14:22:54 +0000
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23:abfd8a6544d7 24:f7e2f1eb3a16
1 <macros>
2 <token name="@PYCOQC_COMMAND@"><![CDATA[
3 #set $pattern = "\"pycoqc\":"
4 @LN_FILES@
5 ]]></token>
6 <xml name="pycoqc_form">
7 <param name="input" type="data" format="txt,json" multiple="true" label="Output of PycoQC"/>
8 </xml>
9 <!-- add here your test files and tests, the more stringent the better -->
10 <xml name="pycoqc_test">
11 <test expect_num_outputs="2">
12 <repeat name="results">
13 <conditional name="software_cond">
14 <param name="software" value="pycoqc"/>
15 <param name="input" value="pycoqc.json"/>
16 </conditional>
17 </repeat>
18 <param name="title" value="Title of the report"/>
19 <param name="comment" value="Commment for the report"/>
20 <!-- <param name="flat" value="true"/> -->
21 <output name="html_report">
22 <assert_contents>
23 <has_text text="Title of the report"/>
24 <has_text text="Commment for the report"/>
25 <has_text text="General Statistics"/>
26 <has_text text="pycoqc_count_plot"/>
27 <has_text text="pycoqc_read_len_plot"/>
28 <has_text text="pycoqc_read_qual_plot"/>
29 </assert_contents>
30 </output>
31 <output name="stats" ftype="tabular">
32 <assert_contents>
33 <has_text text="pycoQC_mqc_generalstats_pycoqc_passed_median_read_length"/>
34 <has_text text="pycoqc_json"/>
35 </assert_contents>
36 </output>
37 </test>
38 </xml>
39 </macros>