Mercurial > repos > iuc > multiqc
comparison test-data/hicexplorer2.log @ 6:01237d721a9f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
| author | iuc |
|---|---|
| date | Sat, 23 Dec 2017 15:57:55 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 5:5746cb5cf08d | 6:01237d721a9f |
|---|---|
| 1 | |
| 2 File small_test_rf_matrix.h5 | |
| 3 Pairs considered 99983 | |
| 4 Min rest. site distance 152 | |
| 5 Max rest. site distance 1500 | |
| 6 | |
| 7 # count (percentage w.r.t. total sequenced reads) | |
| 8 Pairs mappable, unique and high quality 52726 (52.73) | |
| 9 Pairs used 35934 (35.94) | |
| 10 One mate unmapped 8777 (8.78) | |
| 11 One mate not unique 3603 (3.60) | |
| 12 One mate low quality 34877 (34.88) | |
| 13 | |
| 14 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
| 15 dangling end 209 (0.40) | |
| 16 self ligation (removed) 5056 (9.59) | |
| 17 One mate not close to rest site 751 (1.42) | |
| 18 same fragment (800 bp) 10146 (19.24) | |
| 19 self circle 618 (1.17) | |
| 20 duplicated pairs 12 (0.02) | |
| 21 | |
| 22 # count (percentage w.r.t. total valid pairs used) | |
| 23 inter chromosomal 5849 (16.28) | |
| 24 short range < 20kb 8071 (22.46) | |
| 25 long range 22014 (61.26) | |
| 26 inward pairs 6977 (19.42) | |
| 27 outward pairs 8907 (24.79) | |
| 28 left pairs 7012 (19.51) | |
| 29 right pairs 7189 (20.01) |