Mercurial > repos > iuc > multiqc
comparison sylphtax_plugin.xml @ 30:26ee5e11ecbe draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/multiqc commit d4b9696c6c533ca1841c22b52bb3e73833e2e0d4
| author | iuc |
|---|---|
| date | Thu, 15 Jan 2026 20:39:44 +0000 |
| parents | |
| children |
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| 29:e4dd4c0622f6 | 30:26ee5e11ecbe |
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| 1 <macros> | |
| 2 <token name="@SYLPHTAX_COMMAND@"><![CDATA[ | |
| 3 #for $file in $repeat.software_cond.input | |
| 4 @ESCAPE_IDENTIFIER@ | |
| 5 #set file_path = os.path.join($software_dir, str($identifier) + '.sylphmpa') | |
| 6 ln -s '$file' '$file_path' && | |
| 7 #end for | |
| 8 ]]></token> | |
| 9 <xml name="sylphtax_form"> | |
| 10 <param name="input" type="data" format="tabular" multiple="true" label="Output of Sylph-tax" help="It should be the sylphmpa report from Sylph-tax"/> | |
| 11 </xml> | |
| 12 <xml name="sylphtax_test"> | |
| 13 <test expect_num_outputs="3"> | |
| 14 <repeat name="results"> | |
| 15 <conditional name="software_cond"> | |
| 16 <param name="software" value="sylphtax"/> | |
| 17 <param name="input" value="sylphtax.sylphmpa"/> | |
| 18 </conditional> | |
| 19 </repeat> | |
| 20 <param name="title" value="Title of the report"/> | |
| 21 <param name="comment" value="Commment for the report"/> | |
| 22 <param name="flat" value="true"/> | |
| 23 <param name="export" value="true"/> | |
| 24 <output name="html_report"> | |
| 25 <assert_contents> | |
| 26 <has_text text="Title of the report"/> | |
| 27 <has_text text="Commment for the report"/> | |
| 28 <has_text text="Sylph-tax"/> | |
| 29 </assert_contents> | |
| 30 </output> | |
| 31 <output_collection name="plots" type="list" count="8"/> | |
| 32 </test> | |
| 33 </xml> | |
| 34 </macros> |