Mercurial > repos > iuc > multiqc

diff sylphtax_plugin.xml @ 30:26ee5e11ecbe draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/multiqc commit d4b9696c6c533ca1841c22b52bb3e73833e2e0d4
author: iuc
date: Thu, 15 Jan 2026 20:39:44 +0000
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sylphtax_plugin.xml	Thu Jan 15 20:39:44 2026 +0000
@@ -0,0 +1,34 @@
+<macros>
+    <token name="@SYLPHTAX_COMMAND@"><![CDATA[
+        #for $file in $repeat.software_cond.input
+            @ESCAPE_IDENTIFIER@
+            #set file_path = os.path.join($software_dir, str($identifier) + '.sylphmpa')
+            ln -s '$file' '$file_path' &&
+        #end for
+    ]]></token>
+    <xml name="sylphtax_form">
+        <param name="input" type="data" format="tabular" multiple="true" label="Output of Sylph-tax" help="It should be the sylphmpa report from Sylph-tax"/>
+    </xml>
+    <xml name="sylphtax_test">
+        <test expect_num_outputs="3">
+            <repeat name="results">
+                <conditional name="software_cond">
+                    <param name="software" value="sylphtax"/>
+                    <param name="input" value="sylphtax.sylphmpa"/>
+                </conditional>
+            </repeat>
+            <param name="title" value="Title of the report"/>
+            <param name="comment" value="Commment for the report"/>
+            <param name="flat" value="true"/>
+            <param name="export" value="true"/>
+            <output name="html_report">
+                <assert_contents>
+                    <has_text text="Title of the report"/>
+                    <has_text text="Commment for the report"/>
+                    <has_text text="Sylph-tax"/>
+                </assert_contents>
+            </output>
+            <output_collection name="plots" type="list" count="8"/>
+        </test>
+    </xml>
+</macros>