<macros>
    <token name="@TRIMMOMATIC_COMMAND@">
        <!--This pattern is used to check the file content in the @CHECK_LN_FILE@ token. The pattern should be included in the file. -->
    #set $pattern = "Trimmomatic"
    @LN_FILES@
</token>
    <xml name="trimmomatic_form">
        <param name="input" type="data" format="txt,tabular,tsv,csv" label="Output of Trimmomatic" help="It should contain 'TTrimmomatic" multiple="true"/>
    </xml>
    <xml name="trimmomatic_test">
        <test expect_num_outputs="3">
            <repeat name="results">
                <conditional name="software_cond">
                    <param name="software" value="trimmomatic"/>
                    <param name="input" value="trimmomatic.txt"/>
                </conditional>
            </repeat>
            <param name="title" value="Title of the report"/>
            <param name="comment" value="Commment for the report"/>
            <param name="flat" value="true"/>
            <param name="export" value="true"/>
            <output name="html_report">
                <assert_contents>
                    <has_text text="Title of the report"/>
                    <has_text text="Commment for the report"/>
                    <has_text text="trimmomatic_plot"/>
                </assert_contents>
            </output>
            <output name="stats">
                <assert_contents>
                    <has_text text="Trimmomatic_mqc_generalstats_trimmomatic_dropped_pct"/>
                    <has_text text="C2"/>
                    <has_n_lines n="2"/>
                    <has_n_columns n="2"/>
                </assert_contents>
            </output>
            <output_collection name="plots" type="list" count="1"/>
        </test>
    </xml>
</macros>