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view trimmomatic_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
author | iuc |
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date | Mon, 02 Sep 2024 14:22:54 +0000 |
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<macros> <token name="@TRIMMOMATIC_COMMAND@"> <!--This pattern is used to check the file content in the @CHECK_LN_FILE@ token. The pattern should be included in the file. --> #set $pattern = "Trimmomatic" @LN_FILES@ </token> <xml name="trimmomatic_form"> <param name="input" type="data" format="txt,tabular,tsv,csv" label="Output of Trimmomatic" help="It should contain 'TTrimmomatic" multiple="true"/> </xml> <xml name="trimmomatic_test"> <test expect_num_outputs="3"> <repeat name="results"> <conditional name="software_cond"> <param name="software" value="trimmomatic"/> <param name="input" value="trimmomatic.txt"/> </conditional> </repeat> <param name="title" value="Title of the report"/> <param name="comment" value="Commment for the report"/> <param name="flat" value="true"/> <param name="export" value="true"/> <output name="html_report"> <assert_contents> <has_text text="Title of the report"/> <has_text text="Commment for the report"/> <has_text text="trimmomatic_plot"/> </assert_contents> </output> <output name="stats"> <assert_contents> <has_text text="Trimmomatic_mqc_generalstats_trimmomatic_dropped_pct"/> <has_text text="C2"/> <has_n_lines n="2"/> <has_n_columns n="2"/> </assert_contents> </output> <output_collection name="plots" type="list" count="1"/> </test> </xml> </macros>