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comparison mummer.xml @ 2:fc143c06a842 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 96608e94742d17cb73d57201099ff5f5abbef276"
author iuc
date Fri, 24 Jan 2020 15:57:29 -0500
parents 48badcd29c5d
children 48823c9635a4
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1:48badcd29c5d 2:fc143c06a842
1 <tool id="mummer_mummer" name="Mummer" version="@MUMMER_VERSION@"> 1 <tool id="mummer_mummer" name="Mummer" version="@MUMMER_VERSION@@WRAPPER_VERSION@">
2 <description>Align two or more sequences</description> 2 <description>Align two or more sequences</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="5.2.3">gnuplot</requirement> 7 <expand macro="gnuplot_requirement"/>
8 </expand> 8 </expand>
9 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
10 <![CDATA[ 10 <![CDATA[
11 mummer 11 mummer
12 $anchoring 12 $anchoring
45 #if $mumplot.range.custom == 'yes': 45 #if $mumplot.range.custom == 'yes':
46 -x [$mumplot.range.min_x:$mumplot.range.max_x] 46 -x [$mumplot.range.min_x:$mumplot.range.max_x]
47 -y [$mumplot.range.min_y:$mumplot.range.max_y] 47 -y [$mumplot.range.min_y:$mumplot.range.max_y]
48 #end if 48 #end if
49 '$output' 49 '$output'
50 @MUMMER_GNUPLOT_MANUAL@
50 #end if 51 #end if
51 ]]> 52 ]]>
52 </command> 53 </command>
53 <inputs> 54 <inputs>
54 <param name="reference_sequence" type="data" format="fasta" label="Reference Sequence" help="FastA or multi-FastA" /> 55 <param name="reference_sequence" type="data" format="fasta" label="Reference Sequence" help="FastA or multi-FastA" />