Mercurial > repos > iuc > mummer_mummer

changeset 3:48823c9635a4 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 7ea9a5c6d9e7212c38be96baa6615af1ea9d5a8e"
author iuc
date Tue, 13 Oct 2020 21:40:33 +0000
parents fc143c06a842
children bcd65de9725b
files macros.xml mummer.xml
diffstat 2 files changed, 3 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Jan 24 15:57:29 2020 -0500
+++ b/macros.xml	Tue Oct 13 21:40:33 2020 +0000
@@ -17,7 +17,7 @@
         <requirement type="package" version="5.2.7">gnuplot</requirement>
     </xml>
     <token name="@MUMMER_VERSION@">4.0.0beta2</token>
-    <token name="@WRAPPER_VERSION@">+galaxy0</token>
+    <token name="@WRAPPER_VERSION@">+galaxy1</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@MUMMER_VERSION@">mummer4</requirement>
--- a/mummer.xml	Fri Jan 24 15:57:29 2020 -0500
+++ b/mummer.xml	Tue Oct 13 21:40:33 2020 +0000
@@ -17,10 +17,10 @@
             $print_length
             $substring
             $position
+            -threads \${GALAXY_SLOTS:-1}
+            -qthreads \${GALAXY_SLOTS:-1}
             #if $options.advanced == 'enable'
                 -k '$options.suffix'
-                -threads '$options.threads'
-                -qthreads '$options.qthreads'
                 -suflink '$options.suflink'
                 -child '$options.child'
                 -skip '$options.skip'
@@ -78,9 +78,6 @@
             </param>
             <when value="enable" >
                 <param name="suffix" type="integer" argument="-k" value="1" label="Suffix" help="Sampled suffix positions. (-k)" />
-                <param name="threads" type="integer" argument="-threads" value="3" label="Threads"
-                    help="Number of threads to use for -maxmatch; only valid if above parameter is greater than one. (-threads)" />
-                <param name="qthreads" type="integer" argument="-qthreads" value="3" label="Qthreads" help="Number of threads to use for queries. (-qthreads)" />
                 <param name="suflink" type="select" label="Suflink" help="Use suffix links in the index and during search? (-suflink)" >
                     <option value="0">No</option>
                     <option value="1">Yes</option>