Mercurial > repos > iuc > mummer_nucmer

annotate test-data/report.txt @ 3:e18267f90096 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
author iuc
date Sat, 27 Nov 2021 09:59:16 +0000
parents a18fb4f826fc
children 7cd7a55a678d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
2 NUCMER
0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
3
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
4 [REF] [QRY]
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
5 [Sequences]
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
6 TotalSeqs 1 1
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
7 AlignedSeqs 1(100.0000%) 1(100.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
8 UnalignedSeqs 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
9
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
10 [Bases]
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
11 TotalBases 6480 5460
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
12 AlignedBases 670(10.3395%) 663(12.1429%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
13 UnalignedBases 5810(89.6605%) 4797(87.8571%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
14
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
15 [Alignments]
0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
16 1-to-1 2 2
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
17 TotalLength 670 663
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
18 AvgLength 335.0000 331.5000
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
19 AvgIdentity 86.4791 86.4791
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
20
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
21 M-to-M 2 2
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
22 TotalLength 670 663
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
23 AvgLength 335.0000 331.5000
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
24 AvgIdentity 86.4791 86.4791
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
25
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
26 [Feature Estimates]
0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
27 Breakpoints 4 4
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
28 Relocations 0 0
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
29 Translocations 0 0
0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
30 Inversions 0 0
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
31
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
32 Insertions 3 3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
33 InsertionSum 5810 4797
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
34 InsertionAvg 1936.6667 1599.0000
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
35
0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
36 TandemIns 0 0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
37 TandemInsSum 0 0
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
38 TandemInsAvg 0.0000 0.0000
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
39
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
40 [SNPs]
0
a18fb4f826fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
parents:
diff changeset
41 TotalSNPs 78 78
3
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
42 TG 2(2.5641%) 5(6.4103%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
43 TC 9(11.5385%) 28(35.8974%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
44 TA 2(2.5641%) 2(2.5641%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
45 GC 6(7.6923%) 6(7.6923%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
46 GA 5(6.4103%) 2(2.5641%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
47 GT 5(6.4103%) 2(2.5641%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
48 CT 28(35.8974%) 9(11.5385%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
49 CA 5(6.4103%) 6(7.6923%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
50 CG 6(7.6923%) 6(7.6923%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
51 AT 2(2.5641%) 2(2.5641%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
52 AG 2(2.5641%) 5(6.4103%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
53 AC 6(7.6923%) 5(6.4103%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
54
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
55 TotalGSNPs 1 1
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
56 TA 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
57 TG 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
58 TC 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
59 AG 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
60 AC 1(100.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
61 AT 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
62 GC 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
63 GA 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
64 GT 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
65 CT 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
66 CG 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
67 CA 0(0.0000%) 1(100.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
68
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
69 TotalIndels 13 13
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
70 T. 0(0.0000%) 2(15.3846%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
71 G. 2(15.3846%) 1(7.6923%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
72 C. 5(38.4615%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
73 A. 3(23.0769%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
74 .G 1(7.6923%) 2(15.3846%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
75 .C 0(0.0000%) 5(38.4615%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
76 .A 0(0.0000%) 3(23.0769%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
77 .T 2(15.3846%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
78
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
79 TotalGIndels 0 0
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
80 T. 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
81 A. 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
82 G. 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
83 C. 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
84 .A 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
85 .C 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
86 .G 0(0.0000%) 0(0.0000%)
e18267f90096 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
87 .T 0(0.0000%) 0(0.0000%)