Mercurial > repos > iuc > nanoplot

comparison test-data/NanoStats.txt @ 2:acd337269171 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ commit fae386db359dd61fd5e4e2e808413ae478b279ee
author iuc
date Thu, 20 Jun 2019 10:18:48 -0400
parents db1eeffba23e
children a3c4fe6f49ab
comparison
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1:4c172a4a4c9e 2:acd337269171
1 General summary: 1 General summary:
2 Active channels: 169 2 Mean read length: 2,564.9
3 Mean read length: 23212.6 3 Median read length: 1,910.0
4 Mean read quality: 10.1 4 Number of reads: 9.0
5 Median read length: 9390.0 5 Read length N50: 4,275.0
6 Median read quality: 10.3 6 Total bases: 23,084.0
7 Number of reads: 371
8 Read length N50: 60395
9 Total bases: 8611871
10 Number, percentage and megabases of reads above quality cutoffs
11 >Q5: 371 (100.0%) 8.6Mb
12 >Q7: 371 (100.0%) 8.6Mb
13 >Q10: 207 (55.8%) 4.7Mb
14 >Q12: 49 (13.2%) 0.9Mb
15 >Q15: 0 (0.0%) 0.0Mb
16 Top 5 highest mean basecall quality scores and their read lengths
17 1: 13.3 (6333)
18 2: 13.1 (5448)
19 3: 12.9 (27834)
20 4: 12.8 (20351)
21 5: 12.8 (97730)
22 Top 5 longest reads and their mean basecall quality score
23 1: 393431 (10.6)
24 2: 341725 (11.8)
25 3: 320662 (8.0)
26 4: 226843 (9.1)
27 5: 221901 (10.0)