Mercurial > repos > iuc > ncbi_datasets
comparison datasets_genome.xml @ 9:18eed8fa7f23 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit baddca770f8ae8475785374d883b3b42fac27c0c
author | iuc |
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date | Wed, 24 Aug 2022 13:00:58 +0000 |
parents | b2ae7186d41f |
children | a3395b1d871b |
comparison
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8:b2ae7186d41f | 9:18eed8fa7f23 |
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178 <assert_contents> | 178 <assert_contents> |
179 <has_text text="GCF_000013305.1"/> | 179 <has_text text="GCF_000013305.1"/> |
180 </assert_contents> | 180 </assert_contents> |
181 </output> | 181 </output> |
182 <output_collection name="genomic_gtf" type="list"> | 182 <output_collection name="genomic_gtf" type="list"> |
183 <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/> | |
183 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.gtf" compare="contains"/> | 184 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.gtf" compare="contains"/> |
184 <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/> | |
185 </output_collection> | 185 </output_collection> |
186 <output_collection name="genomic_cds" type="list"> | 186 <output_collection name="genomic_cds" type="list"> |
187 <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/> | |
187 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.cds" compare="contains"/> | 188 <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.cds" compare="contains"/> |
188 <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/> | |
189 </output_collection> | 189 </output_collection> |
190 </test> | 190 </test> |
191 <test expect_num_outputs="4"> | 191 <test expect_num_outputs="4"> |
192 <conditional name="query|subcommand"> | 192 <conditional name="query|subcommand"> |
193 <param name="download_by" value="accession"></param> | 193 <param name="download_by" value="accession"></param> |
207 <assert_contents> | 207 <assert_contents> |
208 <has_text text="SAMN02604181"/> | 208 <has_text text="SAMN02604181"/> |
209 </assert_contents> | 209 </assert_contents> |
210 </output> | 210 </output> |
211 <output_collection name="genomic_gff" type="list"> | 211 <output_collection name="genomic_gff" type="list"> |
212 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/> | |
212 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gff" compare="contains"/> | 213 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gff" compare="contains"/> |
213 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/> | |
214 </output_collection> | 214 </output_collection> |
215 <output_collection name="genomic_gbff" type="list"> | 215 <output_collection name="genomic_gbff" type="list"> |
216 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/> | |
216 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gbff" compare="contains"/> | 217 <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gbff" compare="contains"/> |
217 <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/> | |
218 </output_collection> | 218 </output_collection> |
219 </test> | 219 </test> |
220 <test expect_num_outputs="2"> | 220 <test expect_num_outputs="2"> |
221 <conditional name="query|subcommand"> | 221 <conditional name="query|subcommand"> |
222 <param name="download_by" value="accession"></param> | 222 <param name="download_by" value="accession"></param> |
277 <param name="exclude_seq" value="false"/> | 277 <param name="exclude_seq" value="false"/> |
278 <param name="exclude_genomic_cds" value="true"/> | 278 <param name="exclude_genomic_cds" value="true"/> |
279 <param name="exclude_gff3" value="true"/> | 279 <param name="exclude_gff3" value="true"/> |
280 <param name="uncompressed" value="true"/> | 280 <param name="uncompressed" value="true"/> |
281 <output_collection name="genome_fasta" type="list:list" count="2"> | 281 <output_collection name="genome_fasta" type="list:list" count="2"> |
282 <element name="GCF_000002945.1"> | |
283 <element name="chrI"> | |
284 <assert_contents> | |
285 <has_text text=">NC_003424.3"/> | |
286 </assert_contents> | |
287 </element> | |
288 </element> | |
282 <element name="GCF_000146045.2"> | 289 <element name="GCF_000146045.2"> |
283 <element name="chrI"> | 290 <element name="chrI"> |
284 <assert_contents> | 291 <assert_contents> |
285 <has_text text=">NC_001133.9"/> | 292 <has_text text=">NC_001133.9"/> |
286 </assert_contents> | |
287 </element> | |
288 </element> | |
289 <element name="GCF_000002945.1"> | |
290 <element name="chrI"> | |
291 <assert_contents> | |
292 <has_text text=">NC_003424.3"/> | |
293 </assert_contents> | 293 </assert_contents> |
294 </element> | 294 </element> |
295 </element> | 295 </element> |
296 </output_collection> | 296 </output_collection> |
297 </test> | 297 </test> |