Mercurial > repos > iuc > ncbi_datasets
changeset 9:18eed8fa7f23 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit baddca770f8ae8475785374d883b3b42fac27c0c
| author | iuc |
|---|---|
| date | Wed, 24 Aug 2022 13:00:58 +0000 |
| parents | b2ae7186d41f |
| children | a3395b1d871b |
| files | datasets_genome.xml macros.xml |
| diffstat | 2 files changed, 15 insertions(+), 15 deletions(-) [+] |
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--- a/datasets_genome.xml Thu Jun 23 17:33:12 2022 +0000 +++ b/datasets_genome.xml Wed Aug 24 13:00:58 2022 +0000 @@ -180,12 +180,12 @@ </assert_contents> </output> <output_collection name="genomic_gtf" type="list"> + <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/> <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.gtf" compare="contains"/> - <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/> </output_collection> <output_collection name="genomic_cds" type="list"> + <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/> <element name="GCF_000013305.1" file="genome.2.GCF_000013305.1.genomic.cds" compare="contains"/> - <element name="GCF_000007445.1" file="genome.2.GCF_000007445.1.genomic.cds" compare="contains"/> </output_collection> </test> <test expect_num_outputs="4"> @@ -209,12 +209,12 @@ </assert_contents> </output> <output_collection name="genomic_gff" type="list"> + <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/> <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gff" compare="contains"/> - <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gff" compare="contains"/> </output_collection> <output_collection name="genomic_gbff" type="list"> + <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/> <element name="GCF_000013305.1" file="genome.3.GCF_000013305.1.genomic.gbff" compare="contains"/> - <element name="GCF_000007445.1" file="genome.3.GCF_000007445.1.genomic.gbff" compare="contains"/> </output_collection> </test> <test expect_num_outputs="2"> @@ -279,6 +279,13 @@ <param name="exclude_gff3" value="true"/> <param name="uncompressed" value="true"/> <output_collection name="genome_fasta" type="list:list" count="2"> + <element name="GCF_000002945.1"> + <element name="chrI"> + <assert_contents> + <has_text text=">NC_003424.3"/> + </assert_contents> + </element> + </element> <element name="GCF_000146045.2"> <element name="chrI"> <assert_contents> @@ -286,13 +293,6 @@ </assert_contents> </element> </element> - <element name="GCF_000002945.1"> - <element name="chrI"> - <assert_contents> - <has_text text=">NC_003424.3"/> - </assert_contents> - </element> - </element> </output_collection> </test> </tests>
--- a/macros.xml Thu Jun 23 17:33:12 2022 +0000 +++ b/macros.xml Wed Aug 24 13:00:58 2022 +0000 @@ -1,8 +1,8 @@ <macros> - <token name="@TOOL_VERSION@">13.24.1</token> - <token name="@PROFILE@">20.01</token> + <token name="@TOOL_VERSION@">13.35.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@PROFILE@">21.01</token> <token name="@LICENSE@">MIT</token> - <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token> <token name="@SETUP_CERTIFICATES@"><![CDATA[ ## If running in container use certificate from ca-certificates instead of outdated / missing container certificates @@ -11,7 +11,7 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">ncbi-datasets-cli</requirement> - <requirement type="package" version="2021.10.8">ca-certificates</requirement> + <requirement type="package" version="2022.6.15">ca-certificates</requirement> <requirement type="package" version="16.02">p7zip</requirement> </requirements> </xml>