<tool id="ncbi_entrez_direct_einfo" name="NCBI EInfo" version="@TOOL_VERSION@">
  <description>fetch NCBI database metadata</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <version_command>einfo -version</version_command>
  <command detect_errors="exit_code"><![CDATA[
      @ECONTACT@
      einfo
      #if str( $db.target ) == "dbs":
          -dbs
      #else:
          -db "${db.db}"
      #end if
      > '${output_xml}'
      ]]>  
</command>
  <inputs>
      <conditional name="db">
          <param name="target" type="select" label="List DBs or Info on a DB">
              <option value="db" selected="True">DB info</option>
              <option value="dbs">List of DBs</option>
          </param>
          <when value="dbs"/>
          <when value="db">
              <param name="db" type="select" label="Choose your DB" argument="-db">
                  <option value="annotinfo">annotinfo</option>
                  <option value="assembly">assembly</option>
                  <option value="bioproject">bioproject</option>
                  <option value="biosample">biosample</option>
                  <option value="biosystems">biosystems</option>
                  <option value="blastdbinfo">blastdbinfo</option>
                  <option value="books">books</option>
                  <option value="cdd">cdd</option>
                  <option value="clinvar">clinvar</option>
                  <option value="clone">clone</option>
                  <option value="dbvar">dbvar</option>
                  <option value="gap">gap</option>
                  <option value="gapplus">gapplus</option>
                  <option value="gds">gds</option>
                  <option value="gencoll">gencoll</option>
                  <option value="gene">gene</option>
                  <option value="genome">genome</option>
                  <option value="geoprofiles">geoprofiles</option>
                  <option value="grasp">grasp</option>
                  <option value="gtr">gtr</option>
                  <option value="homologene">homologene</option>
                  <option value="medgen">medgen</option>
                  <option value="mesh">mesh</option>
                  <option value="ncbisearch">ncbisearch</option>
                  <option value="nlmcatalog">nlmcatalog</option>
                  <option value="nuccore">nuccore</option>
                  <option value="nucest">nucest</option>
                  <option value="nucgss">nucgss</option>
                  <option value="nucleotide">nucleotide</option>
                  <option value="omim">omim</option>
                  <option value="orgtrack">orgtrack</option>
                  <option value="pcassay">pcassay</option>
                  <option value="pccompound">pccompound</option>
                  <option value="pcsubstance">pcsubstance</option>
                  <option value="pmc">pmc</option>
                  <option value="popset">popset</option>
                  <option value="probe">probe</option>
                  <option value="protein">protein</option>
                  <option value="proteinclusters">proteinclusters</option>
                  <option value="pubmed">pubmed</option>
                  <option value="pubmedhealth">pubmedhealth</option>
                  <option value="seqannot">seqannot</option>
                  <option value="snp">snp</option>
                  <option value="sra">sra</option>
                  <option value="structure">structure</option>
                  <option value="taxonomy">taxonomy</option>
                  <option value="unigene">unigene</option>
              </param>
          </when>
      </conditional>
  </inputs>
  <outputs>
    <data format="xml" name="output_xml"/>
  </outputs>
  <tests>
    <test>
      <param name="db|target" value="db"/>
      <param name="db|db" value="sra"/>
      <output name="output_xml">
          <assert_contents>
              <has_text_matching expression="SRA" />
          </assert_contents>
      </output>
    </test>
  </tests>
  <help><![CDATA[
NCBI Entrez EInfo
=================

Provides the number of records indexed in each field of a given database, the
date of the last update of the database, and the available links from the
database to other Entrez databases.

@DISCLAIMER@
      ]]></help>
  <expand macro="citations"/>
</tool>