Mercurial > repos > iuc > ncbi_entrez_direct_esearch

annotate esearch.xml @ 2:f6046ed1f915 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
author iuc
date Sat, 18 May 2024 20:23:03 +0000
parents b6ffd64c448e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
1 <tool id="ncbi_entrez_direct_esearch" name="NCBI ESearch" version="@TOOL_VERSION@">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
2 <description>search NCBI Databases by text query</description>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
3 <macros>
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
4 <import>macros.xml</import>
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
5 </macros>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
6 <expand macro="requirements"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
7 <version_command>esearch -version</version_command>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
8 <command detect_errors="exit_code"><![CDATA[
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
9 @ECONTACT@
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
10 esearch
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
11 -db '${db.db}'
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
12 -sort '${db.sort}'
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
13 -query '${query}'
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
14 ${spell}
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
15 #if $date.constraint:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
16 -datetype $date.datetype
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
17 #if str( $date.days ):
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
18 -days '${date.days}'
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
19 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
20 #if str( $date.mindate ):
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
21 -mindate '${date.mindate}'
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
22 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
23 #if str( $date.maxdate ):
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
24 -maxdate '${date.maxdate}'
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
25 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
26 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
27 > '$output_xml'
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
28 ]]>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
29 </command>
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
30 <inputs>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
31 <conditional name="db">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
32 <param argument="-db" type="select" label="Choose your DB">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
33 <option value="annotinfo">annotinfo</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
34 <option value="assembly">assembly</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
35 <option value="bioproject">bioproject</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
36 <option value="biosample">biosample</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
37 <option value="biosystems">biosystems</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
38 <option value="blastdbinfo">blastdbinfo</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
39 <option value="books">books</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
40 <option value="cdd">cdd</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
41 <option value="clinvar">clinvar</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
42 <option value="clone">clone</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
43 <option value="dbvar">dbvar</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
44 <option value="gap">gap</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
45 <option value="gapplus">gapplus</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
46 <option value="gds">gds</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
47 <option value="gencoll">gencoll</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
48 <option value="gene">gene</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
49 <option value="genome">genome</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
50 <option value="geoprofiles">geoprofiles</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
51 <option value="grasp">grasp</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
52 <option value="gtr">gtr</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
53 <option value="homologene">homologene</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
54 <option value="medgen">medgen</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
55 <option value="mesh">mesh</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
56 <option value="ncbisearch">ncbisearch</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
57 <option value="nlmcatalog">nlmcatalog</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
58 <option value="nuccore">nuccore</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
59 <option value="nucest">nucest</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
60 <option value="nucgss">nucgss</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
61 <option value="nucleotide">nucleotide</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
62 <option value="omim">omim</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
63 <option value="orgtrack">orgtrack</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
64 <option value="pcassay">pcassay</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
65 <option value="pccompound">pccompound</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
66 <option value="pcsubstance">pcsubstance</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
67 <option value="pmc">pmc</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
68 <option value="popset">popset</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
69 <option value="probe">probe</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
70 <option value="protein">protein</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
71 <option value="proteinclusters">proteinclusters</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
72 <option value="pubmed">pubmed</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
73 <option value="pubmedhealth">pubmedhealth</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
74 <option value="seqannot">seqannot</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
75 <option value="snp">snp</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
76 <option value="sra">sra</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
77 <option value="structure">structure</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
78 <option value="taxonomy">taxonomy</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
79 <option value="unigene">unigene</option>
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
80 </param>
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
81 <when value="annotinfo">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
82 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
83 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
84 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
85 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
86 <when value="assembly">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
87 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
88 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
89 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
90 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
91 <when value="bioproject">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
92 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
93 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
94 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
95 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
96 <when value="biosample">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
97 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
98 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
99 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
100 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
101 <when value="biosystems">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
102 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
103 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
104 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
105 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
106 <when value="blastdbinfo">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
107 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
108 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
109 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
110 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
111 <when value="books">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
112 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
113 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
114 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
115 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
116 <when value="cdd">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
117 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
118 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
119 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
120 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
121 <when value="clinvar">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
122 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
123 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
124 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
125 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
126 <when value="clone">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
127 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
128 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
129 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
130 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
131 <when value="dbvar">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
132 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
133 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
134 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
135 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
136 <when value="gap">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
137 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
138 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
139 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
140 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
141 <when value="gapplus">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
142 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
143 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
144 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
145 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
146 <when value="gds">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
147 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
148 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
149 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
150 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
151 <when value="gencoll">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
152 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
153 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
154 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
155 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
156 <when value="gene">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
157 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
158 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
159 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
160 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
161 <when value="genome">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
162 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
163 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
164 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
165 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
166 <when value="geoprofiles">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
167 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
168 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
169 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
170 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
171 <when value="grasp">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
172 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
173 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
174 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
175 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
176 <when value="gtr">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
177 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
178 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
179 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
180 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
181 <when value="homologene">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
182 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
183 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
184 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
185 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
186 <when value="medgen">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
187 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
188 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
189 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
190 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
191 <when value="mesh">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
192 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
193 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
194 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
195 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
196 <when value="ncbisearch">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
197 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
198 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
199 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
200 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
201 <when value="nlmcatalog">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
202 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
203 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
204 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
205 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
206 <when value="nuccore">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
207 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
208 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
209 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
210 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
211 <when value="nucest">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
212 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
213 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
214 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
215 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
216 <when value="nucgss">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
217 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
218 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
219 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
220 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
221 <when value="nucleotide">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
222 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
223 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
224 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
225 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
226 <when value="omim">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
227 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
228 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
229 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
230 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
231 <when value="orgtrack">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
232 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
233 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
234 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
235 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
236 <when value="pcassay">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
237 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
238 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
239 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
240 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
241 <when value="pccompound">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
242 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
243 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
244 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
245 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
246 <when value="pcsubstance">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
247 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
248 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
249 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
250 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
251 <when value="pmc">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
252 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
253 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
254 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
255 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
256 <when value="popset">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
257 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
258 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
259 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
260 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
261 <when value="probe">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
262 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
263 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
264 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
265 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
266 <when value="protein">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
267 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
268 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
269 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
270 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
271 <when value="proteinclusters">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
272 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
273 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
274 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
275 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
276 <when value="pubmed">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
277 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
278 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
279 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
280 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
281 <when value="pubmedhealth">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
282 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
283 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
284 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
285 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
286 <when value="seqannot">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
287 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
288 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
289 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
290 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
291 <when value="snp">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
292 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
293 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
294 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
295 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
296 <when value="sra">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
297 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
298 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
299 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
300 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
301 <when value="structure">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
302 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
303 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
304 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
305 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
306 <when value="taxonomy">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
307 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
308 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
309 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
310 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
311 <when value="unigene">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
312 <param argument="-sort" type="select" label="Sort results by">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
313 <option value="Default Order">Default Order</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
314 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
315 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
316 </conditional>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
317 <param argument="-query" type="text" label="Search Term">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
318 <sanitizer>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
319 <valid>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
320 <add value="'"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
321 <add value="["/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
322 <add value="]"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
323 </valid>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
324 </sanitizer>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
325 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
326 <param argument="-spell" type="boolean" truevalue="-spell" falsevalue="" checked="false" label="Correct misspellings in query"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
327 <conditional name="date">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
328 <param name="constraint" type="select" label="Filter By Date">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
329 <option value="True">Filter by date</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
330 <option value="False">Don't filter</option>
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
331 </param>
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
332 <when value="True">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
333 <param name="datetype" type="select" label="Date type">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
334 <option value="PDAT">Publish Date</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
335 <option value="EDAT">Entrez Date</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
336 <option value="MDAT">Modification Date</option>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
337 </param>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
338 <param name="days" type="integer" min="1" value="" optional="True" label="Number of days in the past"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
339 <param name="mindate" type="text" label="Minimum date" help="YYYY, YYYY/MM, or YYYY/MM/DD"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
340 <param name="maxdate" type="text" label="Maximum date" help="YYYY, YYYY/MM, or YYYY/MM/DD"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
341 </when>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
342 <when value="False"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
343 </conditional>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
344 </inputs>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
345 <outputs>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
346 <data format="xml" name="output_xml" label="ESearch Results for $query"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
347 </outputs>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
348 <tests>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
349 <test>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
350 <param name="db" value="sra"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
351 <param name="query" value="SRP000007"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
352 <output name="output_xml">
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
353 <assert_contents>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
354 <has_text_matching expression="ENTREZ_DIRECT"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
355 <has_text_matching expression="sra"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
356 <has_text_matching expression="WebEnv"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
357 <has_text_matching expression="QueryKey"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
358 <has_text_matching expression="Count"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
359 <has_text_matching expression="Step"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
360 <has_text_matching expression="WebEnv"/>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
361 </assert_contents>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
362 </output>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
363 </test>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
364 </tests>
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
365 <help><![CDATA[
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
366 NCBI Entrez ESearch
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
367 ===================
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
368
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
369 Responds to a text query with the list of matching UIDs in a given database
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
370 (for later use in ESummary, EFetch or ELink), along with the term translations
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
371 of the query.
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
372
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
373 Example Queries
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
374 ---------------
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
375
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
376 Search in PubMed with the term cancer for abstracts that have an Entrez date
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
377 within the last 60 days:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
378
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
379 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
380 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
381 +======================+=============+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
382 | NCBI Database to Use | PubMed |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
383 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
384 | Term | Cancer |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
385 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
386 | Datetype | Entrez Date |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
387 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
388 | In past N Days | 60 |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
389 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
390
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
391 Search PubMed Central for free full text articles containing the query stem cells:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
392
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
393 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
394 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
395 +======================+======================================+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
396 | NCBI Database to Use | PubMedCentral |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
397 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
398 | Term | Stem Cells AND free fulltext[filter] |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
399 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
400
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
401 Search in Nucleotide for all tRNAs:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
402
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
403 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
404 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
405 +======================+======================================+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
406 | NCBI Database to Use | Nucleotide |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
407 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
408 | Term | biomol trna[prop] |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
409 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
410
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
411 Search in Protein for a molecular weight range:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
412
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
413 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
414 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
415 +======================+======================================+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
416 | NCBI Database to Use | Protein |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
417 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
418 | Term | 70000:90000[molecular weight] |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
419 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
420
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
421 @DISCLAIMER@
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
422 ]]></help>
2
f6046ed1f915 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
iuc
parents: 0
diff changeset
423 <expand macro="citations"/>
0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
424 </tool>