Mercurial > repos > iuc > ncbi_entrez_direct_esearch
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1f7b04db717bd82f93519fdc3f34f589bb671e48
author | iuc |
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date | Mon, 29 Jul 2024 07:07:19 +0000 |
parents | d75bed16aee8 |
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<macros> <token name="@TOOL_VERSION@">22.4</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">entrez-direct</requirement> </requirements> </xml> <token name="@ECONTACT@"><![CDATA[ #set $__contact_email__ = ';'.join( str( $__admin_users__ ).split( ',' ) ) #if str( $__user_email__ ): #set $__contact_email__ = $__contact_email__ + ";" + str( $__user_email__ ) #end if econtact -email "${ __contact_email__ }" -tool "galaxy_ncbi_entrez_direct" > /dev/null ; ]]> </token> <token name="@DISCLAIMER@"><![CDATA[ Usage Guidelines and Requirements ================================= Frequency, Timing, and Registration of E-utility URL Requests ------------------------------------------------------------- In order not to overload the E-utility servers, NCBI recommends that users limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI. Minimizing the Number of Requests --------------------------------- If a task requires searching for and/or downloading a large number of records, it is much more efficient to use the Entrez History to upload and/or retrieve these records in batches rather than using separate requests for each record. Please refer to Application 3 in Chapter 3 for an example. Many thousands of IDs can be uploaded using a single EPost request, and several hundred records can be downloaded using one EFetch request. Disclaimer and Copyright Issues ------------------------------- In accordance with requirements of NCBI's E-Utilities, we must provide the following disclaimer: Please note that abstracts in PubMed may incorporate material that may be protected by U.S. and foreign copyright laws. All persons reproducing, redistributing, or making commercial use of this information are expected to adhere to the terms and conditions asserted by the copyright holder. Transmission or reproduction of protected items beyond that allowed by fair use (PDF) as defined in the copyright laws requires the written permission of the copyright owners. NLM provides no legal advice concerning distribution of copyrighted materials. Please consult your legal counsel. If you wish to do a large data mining project on PubMed data, you can enter into a licensing agreement and lease the data for free from NLM. For more information on The `full disclaimer <https://www.ncbi.nlm.nih.gov/home/about/policies/>`__ is available on their website Liability ~~~~~~~~~ For documents and software available from this server, the U.S. Government does not warrant or assume any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed. Endorsement ~~~~~~~~~~~ NCBI does not endorse or recommend any commercial products, processes, or services. The views and opinions of authors expressed on NCBI's Web sites do not necessarily state or reflect those of the U.S. Government, and they may not be used for advertising or product endorsement purposes. External Links ~~~~~~~~~~~~~~ Some NCBI Web pages may provide links to other Internet sites for the convenience of users. NCBI is not responsible for the availability or content of these external sites, nor does NCBI endorse, warrant, or guarantee the products, services, or information described or offered at these other Internet sites. Users cannot assume that the external sites will abide by the same Privacy Policy to which NCBI adheres. It is the responsibility of the user to examine the copyright and licensing restrictions of linked pages and to secure all necessary permissions. ]]></token> <xml name="citations"> <citations> <citation type="bibtex">@Book{ncbiEDirect, author = {Jonathan Kans}, title = {Entrez Direct: E-utilities on the UNIX Command Line}, year = {2013}, publisher = {National Center for Biotechnology Information, Bethesda, Maryland}, note = {http://www.ncbi.nlm.nih.gov/books/NBK179288/} }</citation> </citations> </xml> </macros>