Mercurial > repos > iuc > ncbi_eutils_einfo

changeset 4:ad0e3818b6ae draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 25545b698cffc9999cde0079b3be176f55e17803"
author iuc
date Mon, 04 Jan 2021 11:43:46 +0000
parents cd5a82a16bbf
children e61965d8a3e2
files einfo.xml test-data/einfo.dblist.xml
diffstat 2 files changed, 11 insertions(+), 54 deletions(-) [+]
line wrap: on
line diff
--- a/einfo.xml	Wed Sep 23 09:49:45 2020 +0000
+++ b/einfo.xml	Mon Jan 04 11:43:46 2021 +0000
@@ -40,12 +40,21 @@
     <test>
       <param name="query_type" value="Description"/>
       <param name="db_select" value="pubmed"/>
-      <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml"/>
+      <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml">
+        <assert_contents>
+          <is_valid_xml/>
+        </assert_contents>
+      </output>
     </test>
     <test>
       <param name="query_type" value="list"/>
       <param name="db_select" value="Database list"/>
-      <output name="default" file="einfo.dblist.xml" ftype="xml"/>
+      <output name="default" ftype="xml">
+        <assert_contents>
+          <has_text text="&lt;DbName&gt;pubmed&lt;/DbName&gt;"/>
+          <is_valid_xml/>
+        </assert_contents>
+      </output>
     </test>
   </tests>
   <help><![CDATA[
--- a/test-data/einfo.dblist.xml	Wed Sep 23 09:49:45 2020 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,52 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-<!DOCTYPE eInfoResult PUBLIC "-//NLM//DTD einfo 20190110//EN" "https://eutils.ncbi.nlm.nih.gov/eutils/dtd/20190110/einfo.dtd">
-<eInfoResult>
-<DbList>
-
-	<DbName>pubmed</DbName>
-	<DbName>protein</DbName>
-	<DbName>nuccore</DbName>
-	<DbName>ipg</DbName>
-	<DbName>nucleotide</DbName>
-	<DbName>structure</DbName>
-	<DbName>sparcle</DbName>
-	<DbName>genome</DbName>
-	<DbName>annotinfo</DbName>
-	<DbName>assembly</DbName>
-	<DbName>bioproject</DbName>
-	<DbName>biosample</DbName>
-	<DbName>blastdbinfo</DbName>
-	<DbName>books</DbName>
-	<DbName>cdd</DbName>
-	<DbName>clinvar</DbName>
-	<DbName>gap</DbName>
-	<DbName>gapplus</DbName>
-	<DbName>grasp</DbName>
-	<DbName>dbvar</DbName>
-	<DbName>gene</DbName>
-	<DbName>gds</DbName>
-	<DbName>geoprofiles</DbName>
-	<DbName>homologene</DbName>
-	<DbName>medgen</DbName>
-	<DbName>mesh</DbName>
-	<DbName>ncbisearch</DbName>
-	<DbName>nlmcatalog</DbName>
-	<DbName>omim</DbName>
-	<DbName>orgtrack</DbName>
-	<DbName>pmc</DbName>
-	<DbName>popset</DbName>
-	<DbName>proteinclusters</DbName>
-	<DbName>pcassay</DbName>
-	<DbName>biosystems</DbName>
-	<DbName>pccompound</DbName>
-	<DbName>pcsubstance</DbName>
-	<DbName>seqannot</DbName>
-	<DbName>snp</DbName>
-	<DbName>sra</DbName>
-	<DbName>taxonomy</DbName>
-	<DbName>biocollections</DbName>
-	<DbName>gtr</DbName>
-</DbList>
-
-</eInfoResult>
-