Mercurial > repos > iuc > ncbi_eutils_esummary
diff esummary.xml @ 0:92bd8a680b9d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
| author | iuc |
|---|---|
| date | Thu, 07 Jul 2016 02:41:02 -0400 |
| parents | |
| children | cb5a0fe9e036 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/esummary.xml Thu Jul 07 02:41:02 2016 -0400 @@ -0,0 +1,57 @@ +<?xml version="1.0"?> +<tool id="ncbi_eutils_esummary" name="NCBI ESummary" version="@WRAPPER_VERSION@"> + <description>fetch summary of history/ids</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <version_command>python esummary.py --version</version_command> + <command detect_errors="aggressive" interpreter="python"><![CDATA[esummary.py +$db_select + +@LIST_OR_HIST@ + + +@EMAIL_ARGUMENTS@ +> $default]]></command> + <inputs> + <expand macro="dbselect"/> + <expand macro="list_or_hist"/> + </inputs> + <outputs> + <data format="xml" name="default" label="Summary of NCBI Search"/> + </outputs> + <tests> + <test> + <param name="qss" value="id_list"/> + <param name="id_list" value="10239"/> + <param name="db_select" value="taxonomy"/> + <output name="default" file="esummary.tax.xml" ftype="xml"/> + </test> + </tests> + <help><![CDATA[ +NCBI Entrez ESummary +==================== + +Responds to a list of UIDs from a given database with the corresponding +document summaries. + +Example Queries +--------------- + +Search against protein: + ++----------------------+--------------------------------------+ +| Parameter | Value | ++======================+======================================+ +| NCBI Database to Use | Protein | ++----------------------+--------------------------------------+ +| ID List | 28800982 28628843 | ++----------------------+--------------------------------------+ + +@REFERENCES@ + +@DISCLAIMER@ + ]]></help> + <expand macro="citations"/> +</tool>