Mercurial > repos > iuc > ncbi_eutils_esummary

annotate esummary.xml @ 0:92bd8a680b9d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:41:02 -0400
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92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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1 <?xml version="1.0"?>
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2 <tool id="ncbi_eutils_esummary" name="NCBI ESummary" version="@WRAPPER_VERSION@">
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3 <description>fetch summary of history/ids</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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8 <version_command>python esummary.py --version</version_command>
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9 <command detect_errors="aggressive" interpreter="python"><![CDATA[esummary.py
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10 $db_select
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11
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12 @LIST_OR_HIST@
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92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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15 @EMAIL_ARGUMENTS@
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16 > $default]]></command>
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17 <inputs>
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18 <expand macro="dbselect"/>
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19 <expand macro="list_or_hist"/>
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20 </inputs>
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21 <outputs>
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22 <data format="xml" name="default" label="Summary of NCBI Search"/>
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23 </outputs>
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24 <tests>
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25 <test>
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26 <param name="qss" value="id_list"/>
92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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27 <param name="id_list" value="10239"/>
92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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28 <param name="db_select" value="taxonomy"/>
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29 <output name="default" file="esummary.tax.xml" ftype="xml"/>
92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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30 </test>
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31 </tests>
92bd8a680b9d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
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32 <help><![CDATA[
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33 NCBI Entrez ESummary
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34 ====================
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36 Responds to a list of UIDs from a given database with the corresponding
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37 document summaries.
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38
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39 Example Queries
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40 ---------------
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42 Search against protein:
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44 +----------------------+--------------------------------------+
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45 | Parameter | Value |
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46 +======================+======================================+
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47 | NCBI Database to Use | Protein |
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48 +----------------------+--------------------------------------+
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49 | ID List | 28800982 28628843 |
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50 +----------------------+--------------------------------------+
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52 @REFERENCES@
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54 @DISCLAIMER@
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55 ]]></help>
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56 <expand macro="citations"/>
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57 </tool>