Mercurial > repos > iuc > nextclade

diff test-data/genemap.gff3 @ 17:07ab9bd68a02 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
author iuc
date Thu, 04 Aug 2022 06:58:48 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/genemap.gff3	Thu Aug 04 06:58:48 2022 +0000
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+# Gene map (genome annotation) of SARS-CoV-2 in GFF format.
+# For gene map purpses we only need some of the columns. We substitute unused values with "." as per GFF spec.
+# See GFF format reference at https://www.ensembl.org/info/website/upload/gff.html
+# seqname	source	feature	start	end	score	strand	frame	attribute
+.	.	gene	26245	26472	.	+	.	 gene_name=E
+.	.	gene	26523	27191	.	+	.	 gene_name=M
+.	.	gene	28274	29533	.	+	.	 gene_name=N
+.	.	gene	266	13468	.	+	.	 gene_name=ORF1a
+.	.	gene	13468	21555	.	+	.	 gene_name=ORF1b
+.	.	gene	25393	26220	.	+	.	 gene_name=ORF3a
+.	.	gene	27202	27387	.	+	.	 gene_name=ORF6
+.	.	gene	27394	27759	.	+	.	 gene_name=ORF7a
+.	.	gene	27756	27887	.	+	.	 gene_name=ORF7b
+.	.	gene	27894	28259	.	+	.	 gene_name=ORF8
+.	.	gene	28284	28577	.	+	.	 gene_name=ORF9b
+.	.	gene	29558	29674	.	+	.	 gene_name=ORF10
+.	.	gene	21563	25384	.	+	.	 gene_name=S