Mercurial > repos > iuc > nextclade

annotate test-data/genemap.gff3 @ 17:07ab9bd68a02 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
author iuc
date Thu, 04 Aug 2022 06:58:48 +0000
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17
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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1 # Gene map (genome annotation) of SARS-CoV-2 in GFF format.
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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2 # For gene map purpses we only need some of the columns. We substitute unused values with "." as per GFF spec.
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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3 # See GFF format reference at https://www.ensembl.org/info/website/upload/gff.html
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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4 # seqname source feature start end score strand frame attribute
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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5 . . gene 26245 26472 . + . gene_name=E
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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6 . . gene 26523 27191 . + . gene_name=M
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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7 . . gene 28274 29533 . + . gene_name=N
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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8 . . gene 266 13468 . + . gene_name=ORF1a
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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9 . . gene 13468 21555 . + . gene_name=ORF1b
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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10 . . gene 25393 26220 . + . gene_name=ORF3a
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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11 . . gene 27202 27387 . + . gene_name=ORF6
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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12 . . gene 27394 27759 . + . gene_name=ORF7a
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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13 . . gene 27756 27887 . + . gene_name=ORF7b
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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14 . . gene 27894 28259 . + . gene_name=ORF8
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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15 . . gene 28284 28577 . + . gene_name=ORF9b
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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16 . . gene 29558 29674 . + . gene_name=ORF10
07ab9bd68a02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nextclade commit 2c63aeec74c260ccd9b2cdbbe1869bef2f3d5cda
iuc
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17 . . gene 21563 25384 . + . gene_name=S