Mercurial > repos > iuc > nugen_nudup

changeset 2:57a00c4e43ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nugen_nudup commit c3b2bf5ee64db2e334711d6f012190f9f7b4ea28
author iuc
date Fri, 03 Mar 2017 19:35:28 -0500
parents 24693e595caf
children 2bad02c1cb0d
files nugen_nudup.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/nugen_nudup.xml	Sat Feb 25 01:38:55 2017 -0500
+++ b/nugen_nudup.xml	Fri Mar 03 19:35:28 2017 -0500
@@ -1,9 +1,9 @@
-<tool id="nugen_nudup" name="NuDUP" version="2.3.1" profile="17.01">
+<tool id="nugen_nudup" name="NuDUP" version="2.3.2" profile="17.01">
     <description>
         mark/remove PCR duplicates based on molecular tags
     </description>
     <requirements>
-        <requirement type="package" version="2.3.1">nudup</requirement>
+        <requirement type="package" version="2.3.2">nudup</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
@@ -20,7 +20,7 @@
         #end if
         ln -f -s '$umi_fastq' '$umi_file' &&
         nudup.py
-        -T \$PWD'/tmp'
+        -T 'tmp'
         $paired_end
         -f '$umi_file'
         --start $start
@@ -146,11 +146,12 @@
         <citation type="bibtex">@misc{Patel2017,
   author = {Patel, Anand},
   title = {NuDUP},
+  version = {2.3.2},
   year = {2017},
   publisher = {GitHub},
   journal = {GitHub repository},
   howpublished = {\url{https://github.com/nugentechnologies/nudup}},
-  commit = {7451de86680d24f19638ed6ac88f6504f0817753}
+  commit = {7a126eb5a4ccc2bacb426c7cf58b351962798093}
 }
         </citation>
     </citations>