Mercurial > repos > iuc > ont_fast5_api_fast5_subset

annotate macros.xml @ 0:eb1f4aa80c72 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
author iuc
date Mon, 08 Jun 2020 15:57:10 -0400
parents
children 3bdd8fa109b1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
2 <macros>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
3 <token name="@TOOL_VERSION@">3.1.3</token>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
4 <xml name="requirements">
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
5 <requirements>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
6 <requirement type="package" version="@TOOL_VERSION@">ont-fast5-api</requirement>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
7 </requirements>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
8 </xml>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
9 <xml name="citations">
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
10 <citations>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
11 <citation type="bibtex">@online{ont_fast5_api,
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
12 author = {Oxford Nanopore Technologies },
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
13 title = {ont_fast5_api},
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
14 year = 2020,
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
15 url = {https://github.com/nanoporetech/ont_fast5_api},
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
16 urldate = {2020-06-01}
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
17 }</citation>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
18 </citations>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
19 </xml>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
20 <token name="@WID@"><![CDATA[
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
21 ont_fast5_api is a simple interface to HDF5 files of the Oxford Nanopore FAST5 file format.
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
22
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
23 - Concrete implementation of the FAST5 file schema using the generic h5py library
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
24 - Plain-english-named methods to interact with and reflect the FAST5 file schema
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
25 - Tools to convert between multi_read and single_read formats
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
26 - Tools to compress/decompress raw data in files
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
27 ]]></token>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
28 <token name="@REFERENCES@"><![CDATA[
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
29 More information are available on `github <https://github.com/nanoporetech/ont_fast5_api>`_.
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
30 ]]></token>
eb1f4aa80c72 "planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit 84504d6786e9edf00367739210d6bae78cb42cc8"
iuc
parents:
diff changeset
31 </macros>