Mercurial > repos > iuc > onto_tk_get_child_terms
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:30:27 -0500 |
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<tool id="onto_tk_get_child_terms" name="Get child terms" version="@VERSION@.0"> <description>of a given OBO term</description> <macros> <import>onto_macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> get_child_terms.pl -f '$input' -t '$term_id' > '$output' </command> <inputs> <expand macro="input_ontology" /> <expand macro="term_id" /> </inputs> <outputs> <data format="tabular" name="output" label="Child terms of ${on_string}"> <actions> <action name="column_names" type="metadata" default="term ID,term name" /> </actions> </data> </outputs> <tests> <test> <param name="input" value="pre_cco_core.obo"/> <param name="term_id" value="CCO:P0000309"/> <output name="output" file="children.tab"/> </test> </tests> <help> .. class:: infomark Collects the child terms (list of IDs) from a given term (existing ID) in the given OBO ontology. **Example** If you ask for the children of the Gene Ontology term with ID **GO:0000079** you will get:: GO:0031660 regulation of cyclin-dependent protein kinase activity during G2/M GO:0031657 regulation of cyclin-dependent protein kinase activity during G1/S GO:0045737 positive regulation of cyclin-dependent protein kinase activity GO:0045736 negative regulation of cyclin-dependent protein kinase activity </help> <expand macro="citations" /> </tool>