Mercurial > repos > iuc > onto_tk_get_relationship_id_vs_relationship_namespace

diff get_relationship_id_vs_relationship_namespace.xml @ 0:08527da0c8a3 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author: iuc
date: Fri, 10 Nov 2017 11:32:09 -0500
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_relationship_id_vs_relationship_namespace.xml	Fri Nov 10 11:32:09 2017 -0500
@@ -0,0 +1,36 @@
+<tool id="onto_tk_get_relationship_id_vs_relationship_namespace" name="Get all the relationship IDs and namespaces" version="@VERSION@.0">
+    <description>from the given OBO ontology</description>
+    <macros>
+        <import>onto_macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="aggressive">
+    get_relationship_id_vs_relationship_namespace.pl
+        -f '$input' > '$output'
+    </command>
+    <inputs>
+        <expand macro="input_ontology" />
+    </inputs>
+    <outputs>
+        <data format="tabular" name="output" label="Relationship IDs and namespace of ${on_string}">
+            <actions>
+                <action name="column_names" type="metadata" default="releationship ID,releationship namespace" />
+            </actions>
+        </data>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="pre_cco_core.obo"/>
+            <output name="output" file="relationship_id_vs_relationship_namespace.tab"/>
+        </test>
+    </tests>
+    <help>
+
+.. class:: infomark
+
+Generates a flat file with two columns (TAB separated) with the relationship_id and relationship_namespace from the elements of the given OBO ontology.
+
+    </help>
+    <expand macro="citations" />
+</tool>
+