Mercurial > repos > iuc > onto_tk_get_relationship_types
diff get_relationship_types.xml @ 0:c5b1acc3c42c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/onto-toolkit commit 9422f839ae354d4c26b02d4494abdeaad518d0e6
author | iuc |
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date | Fri, 10 Nov 2017 11:32:28 -0500 |
parents | |
children | a6c8e5934ed2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_relationship_types.xml Fri Nov 10 11:32:28 2017 -0500 @@ -0,0 +1,48 @@ +<tool id="onto_tk_get_relationship_types" name="Get all the relationship types" version="@VERSION@.0"> + <description>from the given OBO ontology</description> + <macros> + <import>onto_macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="aggressive"> + get_relationship_types.pl + -f '$input' | sort > '$output' + </command> + <inputs> + <expand macro="input_ontology" /> + </inputs> + <outputs> + <data format="tabular" name="output" label="Relationship types of ${on_string}"> + <actions> + <action name="column_names" type="metadata" default="relationship type" /> + </actions> + </data> + </outputs> + <tests> + <test> + <param name="input" value="pre_cco_core.obo"/> + <output name="output" file="relationship_types.tab"/> + </test> + </tests> + <help> + +.. class:: infomark + + +Collects all the names of the relationship_types in a given ontology. + +**Example** + +If you ask for the relationships of the Gene Ontology, you will get:: + + is_a + part_of + regulates + has_part + negatively_regulates + positively_regulates + + </help> + <expand macro="citations" /> +</tool> +